Variant report

Variant	rs543064145
Chromosome Location	chr6:27435251-27435252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:27434557..27436351-chr6:27436388..27438745,2	MCF-7	breast:
2	chr6:27434893..27436769-chr6:27444407..27446972,3	K562	blood:
3	chr6:27429105..27431185-chr6:27434916..27437111,2	K562	blood:
4	chr6:27372759..27375029-chr6:27434389..27436500,2	K562	blood:
5	chr6:27417734..27419835-chr6:27434230..27437154,2	K562	blood:
6	chr6:27435057..27436916-chr6:27758569..27760207,2	K562	blood:
7	chr6:27431405..27433354-chr6:27435095..27436634,2	K562	blood:

Variant related genes	Relation type
ENSG00000271755	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948921	chr6:26556890-27443957	Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	472 gene(s)	inside rSNPs	diseases
2	nsv1022797	chr6:27396961-27864277	Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	390 gene(s)	inside rSNPs	diseases
3	nsv830617	chr6:27424769-27598595	Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	nsv883508	chr6:27434220-27455625	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:27412600-27438000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
2	chr6:27415400-27438600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr6:27424000-27439800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:27425000-27438800	Weak transcription	Colon Smooth Muscle	Colon
5	chr6:27425400-27438400	Weak transcription	Fetal Brain Male	brain
6	chr6:27425600-27439400	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr6:27426400-27438200	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr6:27426600-27438200	Strong transcription	Fetal Thymus	thymus
9	chr6:27427800-27440000	Weak transcription	Esophagus	oesophagus
10	chr6:27428400-27438800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr6:27428800-27437800	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr6:27428800-27439800	Weak transcription	Pancreas	Pancrea
13	chr6:27429200-27437400	Weak transcription	Small Intestine	intestine
14	chr6:27429400-27437200	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr6:27429400-27439000	Weak transcription	Stomach Mucosa	stomach
16	chr6:27429600-27437800	Weak transcription	Fetal Heart	heart
17	chr6:27429600-27439800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr6:27429600-27440000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:27429600-27440000	Weak transcription	Placenta Amnion	Placenta Amnion
20	chr6:27429800-27435400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
21	chr6:27429800-27436200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr6:27429800-27439000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr6:27429800-27439800	Weak transcription	Colonic Mucosa	Colon
24	chr6:27430000-27436200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr6:27430000-27438400	Weak transcription	HepG2	liver
26	chr6:27430000-27438800	Weak transcription	Brain Angular Gyrus	brain
27	chr6:27430400-27436200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr6:27430800-27437000	Strong transcription	Fetal Lung	lung
29	chr6:27431200-27435600	Strong transcription	Duodenum Mucosa	Duodenum
30	chr6:27431200-27436400	Strong transcription	Cortex derived primary cultured neurospheres	brain
31	chr6:27431200-27437600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:27431200-27437800	Strong transcription	Rectal Mucosa Donor 29	rectum
33	chr6:27431200-27438000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr6:27431400-27435600	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr6:27431400-27439400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr6:27431600-27435400	Strong transcription	Primary T helper cells fromperipheralblood	blood
37	chr6:27431600-27435400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr6:27431600-27436800	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr6:27431600-27437000	Strong transcription	NHDF-Ad	bronchial
40	chr6:27431800-27436000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr6:27431800-27438800	Strong transcription	HSMM	muscle
42	chr6:27432000-27435800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr6:27432400-27436200	Weak transcription	Hela-S3	cervix
44	chr6:27432400-27436600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr6:27432800-27438800	Weak transcription	NHLF	lung
46	chr6:27433200-27438400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr6:27433400-27435400	Genic enhancers	Dnd41	blood
48	chr6:27433400-27435600	ZNF genes & repeats	Primary B cells from cord blood	blood
49	chr6:27433400-27435600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr6:27433400-27435600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links