Variant report

Variant	rs543075884
Chromosome Location	chr12:20278485-20278486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898855	chr12:20278430-20354786	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:20258800-20327400	Weak transcription	Aorta	Aorta
2	chr12:20268600-20289200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr12:20278000-20279000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr12:20278000-20279000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr12:20278000-20281200	Enhancers	Hela-S3	cervix
6	chr12:20278200-20278600	Enhancers	Brain Germinal Matrix	brain
7	chr12:20278200-20278800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr12:20278200-20279000	Enhancers	Colon Smooth Muscle	Colon
9	chr12:20278200-20279800	Enhancers	Rectal Smooth Muscle	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links