The 2.0 version of rSNPBase

Variant report

Variant rs543080619
Chromosome Location chr1:94513755-94513756
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:63 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:94505600-94514200 Weak transcription ES-I3 Cell Line embryonic stem cell
2 chr1:94505800-94523600 Weak transcription Psoas Muscle Psoas
3 chr1:94509600-94516800 Enhancers Fetal Muscle Leg muscle
4 chr1:94509800-94514800 Enhancers Placenta Placenta
5 chr1:94509800-94515800 Enhancers H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
6 chr1:94509800-94516800 Enhancers Fetal Adrenal Gland Adrenal Gland
7 chr1:94510000-94514600 Enhancers Left Ventricle heart
8 chr1:94510000-94517400 Enhancers NHDF-Ad bronchial
9 chr1:94510400-94515200 Weak transcription Fetal Lung lung
10 chr1:94511000-94513800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr1:94511200-94513800 Weak transcription iPS-20b Cell Line embryonic stem cell
12 chr1:94511600-94513800 Weak transcription HUES48 Cell Line embryonic stem cell
13 chr1:94511600-94513800 Weak transcription HUES6 Cell Line embryonic stem cell
14 chr1:94511600-94513800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
15 chr1:94511600-94513800 Enhancers Fetal Muscle Trunk muscle
16 chr1:94511600-94514000 Weak transcription H1 Cell Line embryonic stem cell
17 chr1:94511600-94514000 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
18 chr1:94511600-94514000 Weak transcription Pancreas Pancrea
19 chr1:94511600-94514200 Weak transcription HSMMtube muscle
20 chr1:94511600-94514400 Weak transcription Fetal Intestine Small intestine
21 chr1:94511600-94515400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:94511600-94515400 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
23 chr1:94511600-94515400 Weak transcription Skeletal Muscle Female skeletal muscle
24 chr1:94511600-94515400 Weak transcription A549 lung
25 chr1:94511600-94515800 Enhancers Skeletal Muscle Male skeletal muscle
26 chr1:94511600-94515800 Weak transcription Stomach Mucosa stomach
27 chr1:94511600-94515800 Weak transcription NHLF lung
28 chr1:94511600-94520800 Weak transcription Brain Angular Gyrus brain
29 chr1:94511800-94514200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
30 chr1:94511800-94515200 Weak transcription HMEC breast
31 chr1:94511800-94515200 Weak transcription NHEK skin
32 chr1:94511800-94515400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
33 chr1:94511800-94515800 Enhancers hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
34 chr1:94511800-94518000 Weak transcription Fetal Stomach stomach
35 chr1:94512200-94514000 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
36 chr1:94512200-94515000 Enhancers Cortex derived primary cultured neurospheres brain
37 chr1:94512400-94513800 Enhancers Lung lung
38 chr1:94512400-94514200 Enhancers Adipose Nuclei Adipose
39 chr1:94512400-94514600 Enhancers Placenta Amnion Placenta Amnion
40 chr1:94512400-94515400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr1:94512400-94515800 Enhancers Right Atrium heart
42 chr1:94512800-94516800 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr1:94513000-94513800 Enhancers Right Ventricle heart
44 chr1:94513000-94516800 Enhancers Muscle Satellite Cultured Cells --
45 chr1:94513200-94514000 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
46 chr1:94513200-94514400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
47 chr1:94513200-94514800 Enhancers Fetal Kidney kidney
48 chr1:94513200-94516000 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
49 chr1:94513200-94516800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
50 chr1:94513400-94513800 Enhancers Stomach Smooth Muscle stomach

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Last update: Aug 31, 2015