Variant report

Variant	rs543087603
Chromosome Location	chr4:96181114-96181115
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869528	chr4:95537649-96368018	Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv879624	chr4:96147860-96183532	Weak transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv879625	chr4:96147860-96189813	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3424964	chr4:96179179-96181177	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv964075	chr4:96179768-96181827	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:96153200-96189600	Weak transcription	Fetal Kidney	kidney
2	chr4:96171400-96184600	Weak transcription	Fetal Lung	lung
3	chr4:96171600-96181600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr4:96171800-96187600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr4:96177000-96184000	Weak transcription	Ovary	ovary
6	chr4:96177600-96184600	Weak transcription	Brain Angular Gyrus	brain
7	chr4:96177800-96181600	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:96177800-96184400	Weak transcription	Brain Substantia Nigra	brain
9	chr4:96177800-96184600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:96178800-96182000	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links