Variant report

Variant	rs543102288
Chromosome Location	chr11:10314347-10314348
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10312910..10314444-chr11:10314747..10317022,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000133812	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	esv3437706	chr11:10313476-10317774	Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10291200-10314400	Weak transcription	HSMM	muscle
2	chr11:10299400-10314800	Weak transcription	Small Intestine	intestine
3	chr11:10299800-10314400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr11:10306600-10314400	Weak transcription	Brain Germinal Matrix	brain
5	chr11:10306600-10314800	Weak transcription	Aorta	Aorta
6	chr11:10307000-10314400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr11:10307200-10314400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr11:10307600-10314400	Weak transcription	Primary B cells from cord blood	blood
9	chr11:10307600-10314400	Weak transcription	Brain Angular Gyrus	brain
10	chr11:10307800-10314400	Weak transcription	Liver	Liver
11	chr11:10308200-10314400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr11:10308400-10314400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr11:10308600-10314400	Weak transcription	NH-A	brain
14	chr11:10308800-10314600	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr11:10308800-10315000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr11:10309200-10314400	Weak transcription	Brain Substantia Nigra	brain
17	chr11:10309200-10314400	Weak transcription	HSMMtube	muscle
18	chr11:10309400-10314600	Weak transcription	Thymus	Thymus
19	chr11:10310000-10314800	Weak transcription	Left Ventricle	heart
20	chr11:10310200-10314400	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr11:10310400-10314400	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr11:10310600-10314400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr11:10310800-10314400	Weak transcription	Colonic Mucosa	Colon
24	chr11:10310800-10314400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:10311200-10314400	Enhancers	Adipose Nuclei	Adipose
26	chr11:10311200-10314400	Enhancers	Fetal Intestine Large	intestine
27	chr11:10311400-10315000	Weak transcription	Lung	lung
28	chr11:10311400-10315200	Weak transcription	Spleen	Spleen
29	chr11:10311600-10314400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr11:10311600-10314400	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr11:10311600-10314400	Enhancers	HepG2	liver
32	chr11:10311600-10314800	Weak transcription	Sigmoid Colon	Sigmoid Colon
33	chr11:10312000-10314400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
34	chr11:10312000-10314400	Weak transcription	H9 Cell Line	embryonic stem cell
35	chr11:10312000-10314600	Weak transcription	Brain Cingulate Gyrus	brain
36	chr11:10312000-10314800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:10312000-10314800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:10312000-10314800	Weak transcription	Esophagus	oesophagus
39	chr11:10312000-10314800	Weak transcription	Pancreas	Pancrea
40	chr11:10312200-10314400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr11:10312200-10314400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr11:10312200-10314400	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr11:10312200-10314400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr11:10312200-10314400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr11:10312200-10314400	Enhancers	Skeletal Muscle Female	skeletal muscle
46	chr11:10312200-10314800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:10312200-10315000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr11:10312400-10314400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr11:10312600-10314400	Weak transcription	H1 Cell Line	embryonic stem cell
50	chr11:10312600-10314400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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