Variant report

Variant	rs543119772
Chromosome Location	chr11:74872873-74872874
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr11:74872430-74872992	HUVEC	blood vessel:	n/a	n/a
2	REST	chr11:74872605-74872950	PFSK-1	brain:	n/a	n/a
3	POLR2A	chr11:74872623-74872952	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr11:74872513-74872907	HUVEC	blood vessel:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:74868174..74871042-chr11:74871954..74874502,2	K562	blood:
2	chr11:74870955..74873792-chr11:74881314..74883069,2	K562	blood:
3	chr11:74868174..74870399-chr11:74871954..74873534,2	K562	blood:
4	chr11:74854253..74855928-chr11:74871794..74874336,2	MCF-7	breast:

No data

Variant related genes	Relation type
SLCO2B1	TF binding region
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897919	chr11:74862391-74875501	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1054122	chr11:74872792-74895241	Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74863600-74885600	Weak transcription	Colon Smooth Muscle	Colon
2	chr11:74864200-74898400	Weak transcription	Esophagus	oesophagus
3	chr11:74866200-74873000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr11:74866400-74873000	Weak transcription	Fetal Thymus	thymus
5	chr11:74867400-74873200	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:74867600-74875000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:74868600-74875200	Weak transcription	Ovary	ovary
8	chr11:74870000-74881000	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:74870200-74873400	Enhancers	Adipose Nuclei	Adipose
10	chr11:74870400-74875000	Weak transcription	Small Intestine	intestine
11	chr11:74870800-74901600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr11:74871200-74873000	Weak transcription	Brain Hippocampus Middle	brain
13	chr11:74871200-74873400	Enhancers	HUVEC	blood vessel
14	chr11:74871400-74875200	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr11:74871400-74886800	Weak transcription	Brain Substantia Nigra	brain
16	chr11:74871600-74875000	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr11:74871600-74875600	Enhancers	HepG2	liver
18	chr11:74871800-74873000	Weak transcription	Spleen	Spleen
19	chr11:74872200-74873000	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr11:74872200-74873200	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr11:74872200-74873400	Enhancers	Duodenum Mucosa	Duodenum
22	chr11:74872200-74885400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr11:74872400-74873400	Enhancers	Right Atrium	heart
24	chr11:74872400-74875400	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr11:74872400-74876400	Enhancers	Placenta	Placenta
26	chr11:74872400-74883600	Genic enhancers	Fetal Intestine Small	intestine
27	chr11:74872600-74873200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:74872600-74873400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr11:74872600-74873400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr11:74872600-74873800	Enhancers	Colonic Mucosa	Colon
31	chr11:74872600-74874800	Enhancers	Stomach Mucosa	stomach
32	chr11:74872600-74877200	Enhancers	Fetal Muscle Leg	muscle
33	chr11:74872800-74873000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:74872800-74873200	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:74872800-74873200	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr11:74872800-74873400	Enhancers	Left Ventricle	heart
37	chr11:74872800-74873800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr11:74872800-74874000	Transcr. at gene 5' and 3'	Liver	Liver
39	chr11:74872800-74874000	Enhancers	Gastric	stomach
40	chr11:74872800-74874000	Enhancers	Lung	lung
41	chr11:74872800-74874000	Enhancers	Pancreas	Pancrea
42	chr11:74872800-74878200	Enhancers	Fetal Muscle Trunk	muscle
43	chr11:74872800-74878800	Genic enhancers	Fetal Intestine Large	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links