Variant report

Variant	rs543190878
Chromosome Location	chr2:178546237-178546238
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999086	chr2:178262348-178773585	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv536055	chr2:178262348-178773585	Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	nsv431812	chr2:178525371-178584470	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1007925	chr2:178535922-178577002	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv870023	chr2:178545623-178581407	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:178536600-178556000	Weak transcription	Pancreas	Pancrea
2	chr2:178540000-178547400	Enhancers	Fetal Kidney	kidney
3	chr2:178543400-178546400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr2:178544000-178548000	Enhancers	K562	blood
5	chr2:178544600-178546800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr2:178544600-178552600	Weak transcription	Fetal Intestine Small	intestine
7	chr2:178545000-178547000	Enhancers	Duodenum Mucosa	Duodenum
8	chr2:178545200-178548000	Weak transcription	Adipose Nuclei	Adipose
9	chr2:178545400-178549200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr2:178545800-178546600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr2:178545800-178547400	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr2:178546000-178546400	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr2:178546000-178547200	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:178546200-178546400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr2:178546200-178546600	Enhancers	Small Intestine	intestine
16	chr2:178546200-178548600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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