Variant report

Variant	rs543193529
Chromosome Location	chr4:15621675-15621676
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15621417..15624141-chr4:15629634..15631169,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3448986	chr4:14928802-15805558	Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	52 gene(s)	inside rSNPs	diseases
2	esv2757923	chr4:15444617-15749520	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	esv2759227	chr4:15444617-15749520	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv428439	chr4:15556961-15749520	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv518830	chr4:15610771-15672200	Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv521183	chr4:15610771-15692136	Genic enhancers Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
8	esv3376437	chr4:15613963-15626944	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv3464784	chr4:15613969-15626901	Strong transcription ZNF genes & repeats Weak transcription Enhancers Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
10	esv3464785	chr4:15613969-15626901	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	esv3447870	chr4:15621393-15621703	Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15568400-15655600	Weak transcription	Gastric	stomach
2	chr4:15590600-15626400	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr4:15600800-15653000	Weak transcription	Colonic Mucosa	Colon
4	chr4:15601000-15651600	Weak transcription	Small Intestine	intestine
5	chr4:15602000-15626000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
6	chr4:15602600-15655600	Weak transcription	Pancreas	Pancrea
7	chr4:15603000-15624400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr4:15603800-15626800	Weak transcription	NHLF	lung
9	chr4:15605400-15625800	Weak transcription	HMEC	breast
10	chr4:15605600-15624400	Weak transcription	K562	blood
11	chr4:15605800-15650200	Weak transcription	Stomach Mucosa	stomach
12	chr4:15606000-15633800	Weak transcription	Skeletal Muscle Male	skeletal muscle
13	chr4:15612000-15623200	Strong transcription	Primary neutrophils fromperipheralblood	blood
14	chr4:15612800-15625200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:15613400-15623000	Weak transcription	HSMM	muscle
16	chr4:15613400-15625800	Weak transcription	NH-A	brain
17	chr4:15613400-15626200	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr4:15613400-15635000	Weak transcription	HSMMtube	muscle
19	chr4:15613600-15623000	Weak transcription	NHDF-Ad	bronchial
20	chr4:15613600-15626000	Weak transcription	Placenta	Placenta
21	chr4:15615600-15625000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr4:15616200-15622000	ZNF genes & repeats	Fetal Intestine Large	intestine
23	chr4:15617600-15621800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr4:15617800-15622800	ZNF genes & repeats	Fetal Stomach	stomach
25	chr4:15617800-15623800	ZNF genes & repeats	Fetal Intestine Small	intestine
26	chr4:15617800-15624400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr4:15617800-15624600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr4:15617800-15627400	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr4:15618000-15624600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr4:15618200-15622600	ZNF genes & repeats	Fetal Muscle Leg	muscle
31	chr4:15618400-15623600	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
32	chr4:15618600-15625800	Weak transcription	Brain Cingulate Gyrus	brain
33	chr4:15618600-15626000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr4:15618600-15627000	Weak transcription	Right Ventricle	heart
35	chr4:15618600-15651000	Weak transcription	Spleen	Spleen
36	chr4:15619000-15622800	ZNF genes & repeats	Fetal Muscle Trunk	muscle
37	chr4:15619200-15622200	ZNF genes & repeats	Fetal Lung	lung
38	chr4:15619200-15622600	ZNF genes & repeats	Fetal Brain Female	brain
39	chr4:15619200-15622800	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
40	chr4:15620200-15622400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr4:15620200-15622600	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr4:15620200-15622800	ZNF genes & repeats	Fetal Thymus	thymus
43	chr4:15620200-15624400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr4:15620400-15621800	ZNF genes & repeats	Liver	Liver
45	chr4:15620400-15623200	ZNF genes & repeats	Primary T cells from cord blood	blood
46	chr4:15620400-15623800	ZNF genes & repeats	Primary hematopoietic stem cells	blood
47	chr4:15620400-15624600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
48	chr4:15620600-15621800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr4:15620600-15621800	ZNF genes & repeats	Rectal Mucosa Donor 29	rectum
50	chr4:15620600-15622200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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