Variant report

Variant	rs543201492
Chromosome Location	chr14:77779256-77779257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:77779002..77781613-chr14:77924414..77926801,2	MCF-7	breast:
2	chr14:77423294..77426235-chr14:77778174..77779812,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258602	Chromatin interaction
ENSG00000100591	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431017	chr14:76938089-77854647	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	107 gene(s)	inside rSNPs	diseases
2	nsv902105	chr14:77764884-77801431	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv902106	chr14:77767978-77801431	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	esv3391540	chr14:77779171-77779353	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:77742400-77780200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:77751400-77786200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr14:77767800-77780400	Weak transcription	Colonic Mucosa	Colon
4	chr14:77768000-77780600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr14:77768000-77780600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr14:77768800-77780400	Weak transcription	Right Ventricle	heart
7	chr14:77770000-77780400	Weak transcription	Esophagus	oesophagus
8	chr14:77770800-77785800	Weak transcription	K562	blood
9	chr14:77771200-77780800	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr14:77771600-77779600	Weak transcription	Fetal Kidney	kidney
11	chr14:77772000-77780400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr14:77772400-77780400	Weak transcription	Duodenum Smooth Muscle	Duodenum
13	chr14:77772400-77780400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr14:77772400-77780600	Weak transcription	Duodenum Mucosa	Duodenum
15	chr14:77772600-77780600	Weak transcription	Pancreas	Pancrea
16	chr14:77772600-77781000	Weak transcription	Lung	lung
17	chr14:77772600-77781400	Weak transcription	Gastric	stomach
18	chr14:77772600-77782200	Weak transcription	Primary T cells fromperipheralblood	blood
19	chr14:77772600-77783800	Weak transcription	Dnd41	blood
20	chr14:77772600-77785800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr14:77772600-77786400	Weak transcription	Aorta	Aorta
22	chr14:77772800-77780000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:77772800-77780800	Weak transcription	Left Ventricle	heart
24	chr14:77772800-77782400	Weak transcription	Liver	Liver
25	chr14:77772800-77785800	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr14:77773200-77779400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:77773800-77786800	Weak transcription	Small Intestine	intestine
28	chr14:77774000-77779400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr14:77774000-77779400	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr14:77774000-77779400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
31	chr14:77774000-77779600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr14:77774000-77779600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:77774000-77779800	Weak transcription	Ovary	ovary
34	chr14:77774000-77780200	Weak transcription	Adipose Nuclei	Adipose
35	chr14:77774000-77780400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:77774000-77780400	Weak transcription	Fetal Lung	lung
37	chr14:77774000-77780400	Weak transcription	Osteobl	bone
38	chr14:77774000-77783400	Weak transcription	Stomach Mucosa	stomach
39	chr14:77774200-77779400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr14:77774200-77779400	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:77774200-77779400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
42	chr14:77774200-77779400	Weak transcription	HMEC	breast
43	chr14:77774200-77779600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr14:77774200-77779600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:77774200-77781000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr14:77775800-77781400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr14:77775800-77785600	Weak transcription	HUVEC	blood vessel
48	chr14:77775800-77786200	Weak transcription	Primary T cells from cord blood	blood
49	chr14:77776000-77783000	Weak transcription	Fetal Thymus	thymus
50	chr14:77776000-77786000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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