The 2.0 version of rSNPBase
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Variant report
Variant
rs543215119
Chromosome Location
chr1:71703124-71703125
allele
G/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:0)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:2)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
No data
No data
No data
(count:2 , 50 per page) page:
1
No.
lncRNA name
Chromosome Location
lncRNA alias
1
lnc-CTH-6
chr1:71702813-71703406
ENSG00000229956
2
lnc-CTH-6
chr1:71702813-71703799
NONHSAT003893
No data
No data
No data
Extended variants information (count: 2 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv949599
chr1:71655652-72327802
Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNA
19 gene(s)
inside rSNPs
diseases
2
nsv1005726
chr1:71701840-71953242
Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh
TF binding regionCpG islandChromatin interactive regionlncRNA
10 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links