Variant report

Variant	rs543261730
Chromosome Location	chr11:77408481-77408482
allele	-/TA
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:77406566..77409009-chr11:77420746..77423042,2	MCF-7	breast:
2	chr11:77397705..77402199-chr11:77404680..77408663,4	K562	blood:
3	chr11:77400497..77402486-chr11:77406053..77408481,2	MCF-7	breast:
4	chr11:77405932..77408889-chr11:77412418..77414616,3	K562	blood:

Variant related genes	Relation type
ENSG00000048649	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049603	chr11:76900813-77520411	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv541090	chr11:76900813-77520411	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv1038974	chr11:77284036-77431228	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
4	nsv1041384	chr11:77284558-77419809	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv1048892	chr11:77290458-77431228	Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1053074	chr11:77290458-77435831	Enhancers Active TSS Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
7	nsv468641	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv555452	chr11:77301341-77420314	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
9	nsv1035494	chr11:77309696-77431228	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
10	esv3448899	chr11:77407704-77409752	Weak transcription Strong transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	esv3403710	chr11:77408154-77409252	Strong transcription Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:77360400-77419200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:77370000-77410400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:77373800-77413600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr11:77374000-77416200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:77374200-77417400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr11:77374800-77414000	Strong transcription	Fetal Thymus	thymus
7	chr11:77375000-77411200	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr11:77375000-77411200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr11:77375000-77413000	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:77375200-77411000	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr11:77375200-77411000	Strong transcription	Liver	Liver
12	chr11:77375200-77413600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr11:77375400-77411000	Strong transcription	Dnd41	blood
14	chr11:77375600-77411200	Strong transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:77375600-77413200	Strong transcription	Primary T cells fromperipheralblood	blood
16	chr11:77375600-77413400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr11:77376800-77415600	Strong transcription	Primary B cells from peripheral blood	blood
18	chr11:77377600-77410400	Strong transcription	HUES6 Cell Line	embryonic stem cell
19	chr11:77381800-77411000	Weak transcription	Stomach Mucosa	stomach
20	chr11:77382000-77409000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:77384200-77411200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr11:77386400-77414000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr11:77387200-77416600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr11:77388000-77413400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr11:77388000-77413600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr11:77388600-77415800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr11:77388800-77409800	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr11:77389400-77413400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr11:77389800-77435400	Weak transcription	Psoas Muscle	Psoas
30	chr11:77390000-77408800	Weak transcription	NHLF	lung
31	chr11:77390600-77409800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:77391600-77442000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr11:77392400-77410200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
34	chr11:77393000-77409800	Strong transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:77394200-77425200	Weak transcription	Lung	lung
36	chr11:77394600-77416600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:77394600-77435600	Weak transcription	Gastric	stomach
38	chr11:77394600-77441800	Weak transcription	Spleen	Spleen
39	chr11:77394600-77445600	Weak transcription	Esophagus	oesophagus
40	chr11:77394600-77458800	Weak transcription	Small Intestine	intestine
41	chr11:77394800-77409000	Weak transcription	Brain Substantia Nigra	brain
42	chr11:77394800-77418200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr11:77394800-77462600	Weak transcription	Fetal Heart	heart
44	chr11:77395200-77409000	Weak transcription	NHEK	skin
45	chr11:77397000-77411000	Strong transcription	Primary B cells from cord blood	blood
46	chr11:77397800-77409800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
47	chr11:77398200-77409000	Weak transcription	Rectal Smooth Muscle	rectum
48	chr11:77398400-77409800	Strong transcription	Fetal Muscle Leg	muscle
49	chr11:77398800-77422400	Weak transcription	Pancreas	Pancrea
50	chr11:77399800-77409600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood

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