Variant report

Variant	rs543267244
Chromosome Location	chr5:92522648-92522649
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv830400	chr5:92515026-92738896	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv830401	chr5:92518294-92703611	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3447545	chr5:92521496-92524994	Enhancers Weak transcription Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92519600-92522800	Enhancers	NHDF-Ad	bronchial
2	chr5:92521400-92522800	Enhancers	Osteobl	bone
3	chr5:92521400-92523000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr5:92521400-92523600	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:92521800-92528000	Weak transcription	Fetal Kidney	kidney
6	chr5:92522000-92524600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:92522000-92524600	Weak transcription	HSMM	muscle
8	chr5:92522000-92524800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr5:92522200-92524600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr5:92522200-92524600	Weak transcription	HMEC	breast
11	chr5:92522200-92524600	Weak transcription	NHLF	lung
12	chr5:92522400-92524600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr5:92522400-92524600	Weak transcription	HUVEC	blood vessel
14	chr5:92522400-92524600	Weak transcription	NH-A	brain
15	chr5:92522400-92524600	Weak transcription	NHEK	skin
16	chr5:92522400-92525200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr5:92522600-92524800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr5:92522600-92525200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr5:92522600-92525200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links