Variant report

Variant	rs543294865
Chromosome Location	chr1:84619169-84619170
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv546689	chr1:84531117-84670816	Strong transcription Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv546690	chr1:84562265-84655238	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv871731	chr1:84597396-84658591	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv871656	chr1:84601048-84693671	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv997601	chr1:84609346-84672859	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv1005225	chr1:84609871-84667950	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
7	nsv1002537	chr1:84611207-84658450	Genic enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Enhancers Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv999772	chr1:84611207-84667218	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv1013911	chr1:84619164-84667950	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:84610200-84621800	Weak transcription	Aorta	Aorta
2	chr1:84610200-84621800	Weak transcription	Small Intestine	intestine
3	chr1:84610200-84622000	Weak transcription	HSMM	muscle
4	chr1:84610400-84633400	Weak transcription	Fetal Kidney	kidney
5	chr1:84611600-84629800	Weak transcription	Fetal Stomach	stomach
6	chr1:84612600-84621400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:84612600-84621400	Weak transcription	NHDF-Ad	bronchial
8	chr1:84612600-84621600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr1:84612600-84621800	Weak transcription	NH-A	brain
10	chr1:84612800-84621600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:84612800-84628800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr1:84613200-84623400	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr1:84614000-84621000	Weak transcription	HUVEC	blood vessel
14	chr1:84614000-84621200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr1:84614000-84633800	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr1:84614600-84625600	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr1:84614800-84620000	Weak transcription	Dnd41	blood
18	chr1:84614800-84629000	Weak transcription	Brain Hippocampus Middle	brain
19	chr1:84615400-84621600	Weak transcription	Duodenum Mucosa	Duodenum
20	chr1:84615800-84619400	Enhancers	Primary B cells from peripheral blood	blood
21	chr1:84615800-84623800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
22	chr1:84615800-84634800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr1:84616000-84623000	Enhancers	Primary T helper cells PMA-I stimulated	--
24	chr1:84616200-84622800	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr1:84616200-84635200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr1:84616400-84619800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr1:84616400-84623000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr1:84617000-84619800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr1:84617600-84620000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr1:84617800-84619200	Enhancers	Primary neutrophils fromperipheralblood	blood
31	chr1:84617800-84621400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr1:84618000-84619200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
33	chr1:84618000-84619400	Enhancers	Primary monocytes fromperipheralblood	blood
34	chr1:84618200-84619400	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr1:84618200-84623800	Weak transcription	Thymus	Thymus
36	chr1:84618400-84619200	Enhancers	GM12878-XiMat	blood
37	chr1:84618400-84621000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr1:84618400-84621600	Weak transcription	Psoas Muscle	Psoas
39	chr1:84618600-84623000	Enhancers	Primary T helper naive cells from peripheral blood	blood
40	chr1:84618800-84621600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr1:84618800-84622600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
42	chr1:84618800-84623000	Enhancers	Primary T cells from cord blood	blood
43	chr1:84618800-84623600	Weak transcription	Fetal Thymus	thymus
44	chr1:84618800-84630400	Weak transcription	Primary B cells from cord blood	blood
45	chr1:84619000-84619200	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr1:84619000-84621600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr1:84619000-84621600	Weak transcription	Primary hematopoietic stem cells	blood
48	chr1:84619000-84621600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr1:84619000-84621800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr1:84619000-84628800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links