Variant report

Variant	rs543318958
Chromosome Location	chr6:69685425-69685426
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3368681	chr6:69682552-69687715	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603620	chr6:69684850-69691596	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69684200-69686000	Enhancers	Brain Hippocampus Middle	brain
2	chr6:69684200-69686200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:69684600-69686000	Enhancers	Brain Anterior Caudate	brain
4	chr6:69684600-69686000	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr6:69684600-69686000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69684600-69686200	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr6:69684600-69686200	Enhancers	Brain Cingulate Gyrus	brain
8	chr6:69684800-69685800	Enhancers	Fetal Brain Male	brain
9	chr6:69685000-69685800	Enhancers	Brain Germinal Matrix	brain
10	chr6:69685000-69685800	Weak transcription	Brain Substantia Nigra	brain
11	chr6:69685000-69686200	Enhancers	Fetal Lung	lung
12	chr6:69685000-69700000	Weak transcription	Brain Angular Gyrus	brain
13	chr6:69685200-69685600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:69685200-69685800	Enhancers	Fetal Kidney	kidney
15	chr6:69685400-69700400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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