Variant report

Variant	rs543323705
Chromosome Location	chr4:79050874-79050875
allele	-/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534024	chr4:78785189-79437403	ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv1009633	chr4:78887573-79652236	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
3	nsv520625	chr4:79002655-79071788	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv525530	chr4:79024524-79266563	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
5	esv2240939	chr4:79050499-79050949	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:79042600-79052800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:79042800-79052600	Weak transcription	Left Ventricle	heart
3	chr4:79043000-79052600	Weak transcription	Psoas Muscle	Psoas
4	chr4:79047600-79051000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:79047600-79052400	Weak transcription	Fetal Heart	heart
6	chr4:79047600-79057200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr4:79047600-79057400	Weak transcription	Pancreas	Pancrea
8	chr4:79047800-79051000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr4:79050400-79051200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr4:79050400-79056800	Enhancers	HepG2	liver
11	chr4:79050600-79051000	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr4:79050600-79051000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr4:79050600-79051200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr4:79050600-79051200	Enhancers	H9 Cell Line	embryonic stem cell
15	chr4:79050600-79051800	Enhancers	H1 Cell Line	embryonic stem cell
16	chr4:79050600-79051800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr4:79050600-79053600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr4:79050600-79053800	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr4:79050800-79051200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr4:79050800-79051200	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr4:79050800-79051200	Enhancers	HUES64 Cell Line	embryonic stem cell
22	chr4:79050800-79051200	Enhancers	Fetal Intestine Large	intestine
23	chr4:79050800-79051400	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr4:79050800-79051600	Enhancers	Fetal Intestine Small	intestine

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