Variant report

Variant	rs543342197
Chromosome Location	chr1:46269145-46269146
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:257)
CpG islands
(count:61)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:257 , 50 per page) page: 1 2 3 4 5 6

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	YY1	chr1:46269035-46269228	HCT-116	colon:	n/a	chr1:46269097-46269108
2	YY1	chr1:46268919-46269417	GM12878	blood:	n/a	chr1:46269097-46269108
3	ELF1	chr1:46268907-46269258	K562	blood:	n/a	n/a
4	CCNT2	chr1:46268476-46269493	K562	blood:	n/a	n/a
5	POLR2A	chr1:46268258-46269476	HUVEC	blood vessel:	n/a	n/a
6	POLR2A	chr1:46268915-46269520	K562	blood:	n/a	n/a
7	POLR2A	chr1:46268890-46269539	GM19099	blood:	n/a	n/a
8	POLR2A	chr1:46268971-46269430	HUVEC	blood vessel:	n/a	n/a
9	IRF1	chr1:46268947-46269406	K562	blood:	n/a	n/a
10	TCF12	chr1:46268664-46269297	ECC-1	luminal epithelium:	n/a	n/a
11	TAF1	chr1:46268888-46269426	K562	blood:	n/a	n/a
12	POLR2A	chr1:46268380-46269541	HepG2	liver:	n/a	n/a
13	POLR2A	chr1:46268988-46269519	GM12878	blood:	n/a	n/a
14	MXI1	chr1:46267845-46269463	IMR90	lung:	n/a	n/a
15	FOXP2	chr1:46269012-46269378	PFSK-1	brain:	n/a	n/a
16	CBX3	chr1:46267924-46269472	K562	blood:	n/a	n/a
17	POLR2A	chr1:46268891-46269432	HL-60	blood:	n/a	n/a
18	JUN	chr1:46268380-46269411	K562	blood:	n/a	chr1:46268571-46268580 chr1:46268572-46268581
19	ZNF143	chr1:46269101-46269334	GM12878	blood:	n/a	chr1:46269300-46269310
20	HMGN3	chr1:46268990-46269476	K562	blood:	n/a	n/a
21	REST	chr1:46268608-46269528	H1-neurons	neurons:	n/a	n/a
22	POLR2A	chr1:46268821-46269418	K562	blood:	n/a	n/a
23	TAF1	chr1:46268931-46269441	ECC-1	luminal epithelium:	n/a	n/a
24	NRF1	chr1:46268990-46269394	GM12878	blood:	n/a	chr1:46269193-46269204
25	POLR2A	chr1:46269048-46269452	A549	lung:	n/a	n/a
26	TAF1	chr1:46268954-46269479	H1-hESC	embryonic stem cell:	n/a	n/a
27	MAZ	chr1:46268978-46269368	HepG2	liver:	n/a	n/a
28	POLR2A	chr1:46268922-46269165	HepG2	liver:	n/a	n/a
29	POLR2A	chr1:46269016-46269478	GM12891	blood:	n/a	n/a
30	POLR2A	chr1:46268933-46269516	GM12878	blood:	n/a	n/a
31	TCF3	chr1:46269078-46269461	GM12878	blood:	n/a	n/a
32	POLR2A	chr1:46268830-46269421	K562	blood:	n/a	n/a
33	POLR2A	chr1:46268903-46269426	H1-neurons	neurons:	n/a	n/a
34	KAP1	chr1:46268177-46269201	HEK293	kidney:	n/a	chr1:46268570-46268579
35	POLR2A	chr1:46268933-46269518	Hela-S3	cervix:	n/a	n/a
36	SIN3AK20	chr1:46268906-46269509	SK-N-SH	brain:	n/a	n/a
37	POLR2A	chr1:46268304-46269449	HUVEC	blood vessel:	n/a	n/a
38	MYC	chr1:46268395-46269407	K562	blood:	n/a	chr1:46268571-46268580
39	POLR2A	chr1:46268332-46269530	IMR90	lung:	n/a	n/a
40	POLR2A	chr1:46268925-46269557	GM12878	blood:	n/a	n/a
41	POLR2A	chr1:46268246-46269502	PFSK-1	brain:	n/a	n/a
42	MAX	chr1:46268942-46269412	H1-hESC	embryonic stem cell:	n/a	n/a
43	EP300	chr1:46268310-46269193	K562	blood:	n/a	chr1:46269101-46269117 chr1:46268571-46268580
44	POLR2A	chr1:46269062-46269477	GM12892	blood:	n/a	n/a
45	POLR2A	chr1:46268267-46269474	HUVEC	blood vessel:	n/a	n/a
46	HDAC2	chr1:46268985-46269360	HepG2	liver:	n/a	n/a
47	POLR2A	chr1:46268951-46269509	MCF10A-Er-Src	breast:	n/a	n/a
48	HEY1	chr1:46268914-46269489	K562	blood:	n/a	chr1:46269304-46269319 chr1:46269116-46269131
49	REST	chr1:46269034-46269453	PFSK-1	brain:	n/a	n/a
50	CREB1	chr1:46269018-46269446	A549	lung:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:46269120-46269170	ECC-1	luminal epithelium:	n/a
2	chr1:46269120-46269170	GM12891	blood:	n/a
3	chr1:46269120-46269170	AG09319	gingival:	n/a
4	chr1:46269120-46269170	GM06990	blood:	n/a
5	chr1:46269120-46269170	K562	blood:	n/a
6	chr1:46269120-46269170	HRE	kidney:	n/a
7	chr1:46269120-46269170	AG10803	skin:	n/a
8	chr1:46269120-46269170	NB4	blood:	n/a
9	chr1:46269120-46269170	NHDF-neo	bronchial:	n/a
10	chr1:46269120-46269170	PANC-1	pancreas:	n/a
11	chr1:46269120-46269170	BE2_C	brain:	n/a
12	chr1:46269120-46269170	HMEC	breast:	n/a
13	chr1:46269120-46269170	CMK	blood:	n/a
14	chr1:46269120-46269170	GM12892	blood:	n/a
15	chr1:46269120-46269170	PFSK-1	brain:	n/a
16	chr1:46269120-46269170	HepG2	liver:	n/a
17	chr1:46269120-46269170	Hepatocyte	liver:	n/a
18	chr1:46269120-46269170	Caco-2	colon:	n/a
19	chr1:46269120-46269170	GM19239	blood:	n/a
20	chr1:46269120-46269170	HL-60	blood:	n/a
21	chr1:46269120-46269170	HNPCEpiC	eye:	n/a
22	chr1:46269120-46269170	U87	brain:	n/a
23	chr1:46269120-46269170	T-47D	breast:	n/a
24	chr1:46269120-46269170	ovcar-3	ovarian:	n/a
25	chr1:46269120-46269170	BJ	skin:	n/a
26	chr1:46269120-46269170	HRPEpiC	eye:	n/a
27	chr1:46269120-46269170	AG04450	lung:	fetal
28	chr1:46269120-46269170	SK-N-MC	brain:	n/a
29	chr1:46269120-46269170	AG04449	skin:	fetal
30	chr1:46269120-46269170	Hela-S3	cervix:	n/a
31	chr1:46269120-46269170	SK-N-SH	brain:	n/a
32	chr1:46269120-46269170	SAEC	small airway:	n/a
33	chr1:46269120-46269170	HAEpiC	amniotic membrane:	n/a
34	chr1:46269120-46269170	MCF-7	breast:	n/a
35	chr1:46269120-46269170	HIPEpiC	eye:	n/a
36	chr1:46269120-46269170	ProgFib	skin:	n/a
37	chr1:46269120-46269170	AG09309	skin:	n/a
38	chr1:46269120-46269170	SK-N-SH_RA	brain:	n/a
39	chr1:46269120-46269170	GM12878	blood:	n/a
40	chr1:46269120-46269170	AoSMC	blood vessel:	n/a
41	chr1:46269120-46269170	HPAEpiC	pulmonary alveolar:	n/a
42	chr1:46269120-46269170	HUVEC	blood vessel:	n/a
43	chr1:46269120-46269170	HRCEpiC	kidney:	n/a
44	chr1:46269120-46269170	IMR90	lung:	fetal
45	chr1:46269120-46269170	HCF	heart:	n/a
46	chr1:46269120-46269170	SKMC	muscle:	n/a
47	chr1:46269120-46269170	NT2-D1	testis:	n/a
48	chr1:46269120-46269170	A549	lung:	n/a
49	chr1:46269120-46269170	RPTEC	kidney:	n/a
50	chr1:46269120-46269170	HCM	heart:	n/a

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:46215876..46219394-chr1:46266629..46270801,6	K562	blood:
2	chr1:46049133..46051352-chr1:46267497..46269310,2	MCF-7	breast:
3	chr1:46151080..46154672-chr1:46265067..46271759,20	K562	blood:
4	chr1:46216117..46217904-chr1:46267595..46269245,2	MCF-7	breast:
5	chr1:46150526..46156032-chr1:46265067..46272923,24	K562	blood:
6	chr1:46149604..46155141-chr1:46267151..46271003,9	MCF-7	breast:
7	chr1:46269099..46269845-chr11:10829742..10830680,2	Hela-S3	cervix:
8	chr1:46049190..46051065-chr1:46268579..46270111,2	K562	blood:
9	chr1:46150825..46154977-chr1:46267620..46271634,6	MCF-7	breast:
10	chr1:46268308..46270413-chr7:26238840..26240934,2	MCF-7	breast:
11	chr1:46213556..46220443-chr1:46266629..46271737,8	K562	blood:

No data

Variant related genes	Relation type
MAST2	TF binding region
MAST2	CpG island
ENSG00000132780	Chromatin interaction
ENSG00000110321	Chromatin interaction
ENSG00000197429	Chromatin interaction
ENSG00000159592	Chromatin interaction
ENSG00000122566	Chromatin interaction
ENSG00000159596	Chromatin interaction
ENSG00000122565	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:38 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529631	chr1:45905936-46335246	Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	207 gene(s)	inside rSNPs	diseases
2	nsv932680	chr1:45935520-46686477	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
3	nsv868828	chr1:45953923-46686477	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	232 gene(s)	inside rSNPs	diseases
4	nsv871928	chr1:46024701-46609736	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
5	nsv1014128	chr1:46097670-46394540	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	77 gene(s)	inside rSNPs	diseases
6	nsv1010054	chr1:46144479-46320493	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
7	nsv1006861	chr1:46144479-46417621	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	76 gene(s)	inside rSNPs	diseases
8	nsv1003049	chr1:46144479-46476149	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
9	nsv871233	chr1:46153203-46311275	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
10	nsv1008219	chr1:46160098-46493958	Genic enhancers Strong transcription ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
11	nsv534943	chr1:46160098-46493958	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
12	nsv1000498	chr1:46171836-46438252	Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
13	nsv870791	chr1:46182916-46398415	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
14	nsv871023	chr1:46184300-46301182	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
15	nsv998925	chr1:46184925-46353041	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
16	nsv1003986	chr1:46184925-46417621	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
17	nsv1007501	chr1:46184925-46439533	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
18	nsv534944	chr1:46184925-46439533	Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
19	nsv1006891	chr1:46189258-46408032	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
20	nsv1009355	chr1:46189258-46463012	Active TSS Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	39 gene(s)	inside rSNPs	diseases
21	nsv870626	chr1:46196813-46314170	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
22	nsv871312	chr1:46196813-46353332	Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
23	esv2830426	chr1:46202361-46347367	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
24	nsv546158	chr1:46216575-46495434	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
25	nsv870911	chr1:46216575-46498375	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
26	nsv1013628	chr1:46221617-46356565	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	12 gene(s)	inside rSNPs	diseases
27	nsv431268	chr1:46223080-46495480	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
28	nsv546159	chr1:46223086-46398415	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
29	nsv461417	chr1:46223086-46416348	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
30	nsv546160	chr1:46223086-46416348	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
31	nsv524147	chr1:46236098-46438076	Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
32	nsv1007162	chr1:46244432-46417621	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
33	nsv1015136	chr1:46244432-46439533	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
34	nsv1003517	chr1:46244432-46609881	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
35	nsv1007759	chr1:46248667-46493959	Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
36	nsv534945	chr1:46248667-46493959	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
37	nsv916232	chr1:46248686-46493918	Genic enhancers Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
38	esv3341336	chr1:46268590-46271138	Flanking Active TSS Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:46268200-46269200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr1:46268200-46269200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
3	chr1:46268200-46270200	Active TSS	Fetal Kidney	kidney
4	chr1:46268200-46270800	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:46268400-46269200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr1:46268400-46269200	Flanking Active TSS	Dnd41	blood
7	chr1:46268600-46269200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:46268600-46269200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
9	chr1:46268600-46269200	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr1:46268600-46269200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
11	chr1:46268600-46269200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
12	chr1:46268600-46269200	Flanking Active TSS	Liver	Liver
13	chr1:46268600-46269200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr1:46268600-46269200	Flanking Active TSS	HUVEC	blood vessel
15	chr1:46268600-46269200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr1:46268600-46270200	Active TSS	Pancreatic Islets	Pancreatic Islet
17	chr1:46268600-46270200	Active TSS	Left Ventricle	heart
18	chr1:46268600-46270400	Active TSS	Aorta	Aorta
19	chr1:46268600-46270400	Active TSS	Psoas Muscle	Psoas
20	chr1:46268600-46270600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr1:46268600-46270800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr1:46268800-46269200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
23	chr1:46268800-46269200	Flanking Active TSS	Primary B cells from peripheral blood	blood
24	chr1:46268800-46269200	Flanking Active TSS	Primary T cells fromperipheralblood	blood
25	chr1:46268800-46269200	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
26	chr1:46268800-46270000	Active TSS	Primary T killer memory cells from peripheral blood	blood
27	chr1:46268800-46270000	Active TSS	Placenta Amnion	Placenta Amnion
28	chr1:46268800-46270200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr1:46268800-46270200	Active TSS	Pancreas	Pancrea
30	chr1:46268800-46270200	Active TSS	Right Ventricle	heart
31	chr1:46268800-46270200	Active TSS	Thymus	Thymus
32	chr1:46268800-46270400	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
33	chr1:46268800-46270600	Active TSS	H9 Cell Line	embryonic stem cell
34	chr1:46268800-46270800	Active TSS	ES-I3 Cell Line	embryonic stem cell
35	chr1:46268800-46271000	Active TSS	A549	lung
36	chr1:46268800-46271000	Active TSS	NHDF-Ad	bronchial
37	chr1:46269000-46269200	Active TSS	Primary T helper naive cells from peripheral blood	blood
38	chr1:46269000-46269200	Flanking Active TSS	Fetal Muscle Trunk	muscle
39	chr1:46269000-46269200	Enhancers	Stomach Mucosa	stomach
40	chr1:46269000-46269400	Transcr. at gene 5' and 3'	Right Atrium	heart
41	chr1:46269000-46269800	Active TSS	Primary B cells from cord blood	blood
42	chr1:46269000-46269800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
43	chr1:46269000-46269800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
44	chr1:46269000-46269800	Active TSS	Primary T helper memory cells from peripheral blood 1	blood
45	chr1:46269000-46269800	Active TSS	Primary T helper cells PMA-I stimulated	--
46	chr1:46269000-46269800	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
47	chr1:46269000-46269800	Active TSS	Primary T regulatory cells fromperipheralblood	blood
48	chr1:46269000-46269800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
49	chr1:46269000-46269800	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr1:46269000-46269800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood

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