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Variant report
Variant
rs543349640
Chromosome Location
chr16:48750825-48750826
allele
G/T
Outlinks
Ensembl
 
UCSC
Chromatin state
Related regulatory elements
Target genes
Other information
TF binding region (count:14)
CpG islands (count:0)
Chromatin interactive region (count:0)
LncRNA region (count:0)
Mature miRNA region (count: 0)
miRNA target sites (count:0)
(count:14 , 50 per page) page:
1
No.
Transcrition factor
Chromosome Location
Cell Line
Cell type
Cell Stage
Matched TF binding sites
1
CTCF
chr16:48750796-48750850
MCF-7
breast:
n/a
n/a
2
CTCF
chr16:48750740-48750890
Hela-S3
cervix:
n/a
n/a
3
RAD21
chr16:48750751-48750982
H1-hESC
embryonic stem cell:
n/a
n/a
4
CTCF
chr16:48750760-48750910
WERI-Rb-1
eye:
n/a
n/a
5
CTCF
chr16:48750740-48750890
NB4
blood:
n/a
n/a
6
CTCF
chr16:48750740-48750890
GM12873
blood:
n/a
n/a
7
CTCF
chr16:48750816-48750884
MCF-7
breast:
n/a
n/a
8
CTCF
chr16:48750800-48750950
HEK293
kidney:
n/a
n/a
9
CTCF
chr16:48750780-48750930
SK-N-SH_RA
brain:
n/a
n/a
10
CTCF
chr16:48750720-48750870
HepG2
liver:
n/a
n/a
11
CTCF
chr16:48750740-48750890
HEK293
kidney:
n/a
n/a
12
CTCF
chr16:48750780-48750930
WERI-Rb-1
eye:
n/a
n/a
13
CTCF
chr16:48750818-48750881
H1-hESC
embryonic stem cell:
n/a
n/a
14
CTCF
chr16:48750760-48750910
GM12864
blood:
n/a
n/a
No data
No data
No data
No data
No data
Variant related genes
Relation type
KLF8P1
TF binding region
Extended variants information (count: 1 )
Associated traits (count: 0)
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
No.
Variant name
Chromosome position
Chromatin state
Related regulatory elements
Target genes
Extended variants
Associated traits
1
nsv833220
chr16:48747177-48899984
Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS
TF binding regionCpG islandChromatin interactive regionlncRNA
3 gene(s)
inside rSNPs
diseases
No data
Chromatin state (count:0 , 50 per page) page:
No data
Quick Search:
Input of quick search could be:
dbSNP/dbVar ID:
rs12345
/
nsv7879
a single nucleotide as 0-based coordinates:
chr1:12345
chromosomal regions:
chr1:12345-34567
what's new
New variant types
New dimension of annotation
New regulatory manner
More detailed annotation on variant overlapped TFBS
More extended data
New search manner
Quick links