The 2.0 version of rSNPBase

Variant report

Variant rs543362407
Chromosome Location chr3:113080874-113080875
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:51 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr3:113024600-113081000 Weak transcription Stomach Smooth Muscle stomach
2 chr3:113036600-113081000 Weak transcription Rectal Mucosa Donor 31 rectum
3 chr3:113036800-113081000 Weak transcription Gastric stomach
4 chr3:113036800-113088600 Weak transcription Primary hematopoietic stem cells short term culture blood
5 chr3:113042200-113116800 Weak transcription Primary B cells from cord blood blood
6 chr3:113042400-113103600 Weak transcription Sigmoid Colon Sigmoid Colon
7 chr3:113045400-113097600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
8 chr3:113059000-113081000 Weak transcription Fetal Stomach stomach
9 chr3:113066200-113102800 Weak transcription Aorta Aorta
10 chr3:113066400-113081000 Weak transcription Breast Myoepithelial Primary Cells Breast
11 chr3:113066400-113099000 Weak transcription Duodenum Smooth Muscle Duodenum
12 chr3:113066400-113117600 Weak transcription Fetal Muscle Leg muscle
13 chr3:113067600-113094400 Weak transcription Primary hematopoietic stem cells blood
14 chr3:113068400-113117000 Weak transcription Thymus Thymus
15 chr3:113069000-113101800 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
16 chr3:113069400-113088400 Weak transcription Fetal Intestine Small intestine
17 chr3:113069800-113083000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
18 chr3:113070000-113081000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
19 chr3:113070600-113099000 Weak transcription Adipose Nuclei Adipose
20 chr3:113070800-113087000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
21 chr3:113071400-113083200 Weak transcription Pancreatic Islets Pancreatic Islet
22 chr3:113072200-113096800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr3:113072400-113117200 Weak transcription Primary T cells fromperipheralblood blood
24 chr3:113072800-113088600 Weak transcription Spleen Spleen
25 chr3:113073600-113081000 Weak transcription Pancreas Pancrea
26 chr3:113073800-113085400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
27 chr3:113074000-113082000 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
28 chr3:113074400-113184400 Weak transcription Hela-S3 cervix
29 chr3:113074800-113081000 Weak transcription Liver Liver
30 chr3:113077800-113102400 Weak transcription HSMM muscle
31 chr3:113078600-113109800 Weak transcription Fetal Muscle Trunk muscle
32 chr3:113079400-113081000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
33 chr3:113079400-113081000 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
34 chr3:113079400-113081000 Weak transcription Duodenum Mucosa Duodenum
35 chr3:113079400-113081000 Weak transcription Fetal Intestine Large intestine
36 chr3:113079400-113081800 Weak transcription NHEK skin
37 chr3:113079800-113081600 Strong transcription Left Ventricle heart
38 chr3:113079800-113084200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
39 chr3:113080000-113082600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
40 chr3:113080000-113082600 Weak transcription HSMMtube muscle
41 chr3:113080000-113083600 Weak transcription Brain Inferior Temporal Lobe brain
42 chr3:113080000-113114200 Weak transcription Primary T helper cells fromperipheralblood blood
43 chr3:113080000-113123800 Weak transcription Primary B cells from peripheral blood blood
44 chr3:113080200-113081200 Weak transcription Primary T cells from cord blood blood
45 chr3:113080200-113082600 Weak transcription Primary T regulatory cells fromperipheralblood blood
46 chr3:113080200-113085000 Weak transcription Skeletal Muscle Female skeletal muscle
47 chr3:113080200-113117600 Weak transcription Psoas Muscle Psoas
48 chr3:113080400-113081600 Strong transcription Lung lung
49 chr3:113080600-113081200 Weak transcription Esophagus oesophagus
50 chr3:113080800-113081600 Strong transcription Ovary ovary

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Last update: Aug 31, 2015