Variant report

Variant	rs543369497
Chromosome Location	chr2:231265759-231265760
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SP140-5	chr2:231265670-231265768	NONHSAT077280
2	lnc-SP140-5	chr2:231264842-231266158	NONHSAT077278

Extended variants
information (count: 10 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv18000	chr2:231072978-231467847	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv875945	chr2:231172642-231267925	Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv869708	chr2:231173700-231267616	Genic enhancers ZNF genes & repeats Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3486129	chr2:231175581-231265831	Strong transcription Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv3486131	chr2:231175581-231265831	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv2751844	chr2:231179495-231280495	Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv1006206	chr2:231179884-231268938	Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv875946	chr2:231184106-231277567	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv875947	chr2:231190446-231281286	Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
10	nsv979180	chr2:231264860-231267173	Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:90 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:231220000-231275800	Weak transcription	Stomach Mucosa	stomach
2	chr2:231222200-231273200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:231225200-231268000	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:231228800-231275600	Weak transcription	Psoas Muscle	Psoas
5	chr2:231234200-231274400	Weak transcription	Brain Hippocampus Middle	brain
6	chr2:231245800-231266000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr2:231248000-231274600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr2:231249000-231273200	Weak transcription	Fetal Muscle Trunk	muscle
9	chr2:231250200-231273200	Weak transcription	Right Ventricle	heart
10	chr2:231252600-231272600	Weak transcription	NHDF-Ad	bronchial
11	chr2:231253600-231265800	Strong transcription	Sigmoid Colon	Sigmoid Colon
12	chr2:231254200-231272800	Weak transcription	NHEK	skin
13	chr2:231254400-231267800	Weak transcription	NHLF	lung
14	chr2:231255200-231275600	Weak transcription	HMEC	breast
15	chr2:231258000-231267600	Weak transcription	Esophagus	oesophagus
16	chr2:231258200-231273000	Weak transcription	NH-A	brain
17	chr2:231258800-231275600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr2:231259600-231268200	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr2:231260200-231275400	Weak transcription	Small Intestine	intestine
20	chr2:231260800-231272000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr2:231261000-231268400	Weak transcription	Fetal Lung	lung
22	chr2:231261000-231270600	Strong transcription	Monocytes-CD14+_RO01746	blood
23	chr2:231261000-231271400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:231261000-231271400	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr2:231261000-231271800	Strong transcription	Primary B cells from peripheral blood	blood
26	chr2:231261000-231272000	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr2:231261200-231266000	Strong transcription	Primary B cells from cord blood	blood
28	chr2:231261200-231271800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
29	chr2:231261400-231265800	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr2:231261800-231266600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr2:231262200-231267400	Weak transcription	Osteobl	bone
32	chr2:231262200-231268200	Weak transcription	Left Ventricle	heart
33	chr2:231262800-231267400	Weak transcription	GM12878-XiMat	blood
34	chr2:231262800-231273200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr2:231263600-231268000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr2:231264000-231270600	Strong transcription	Liver	Liver
37	chr2:231264200-231266000	Strong transcription	Primary monocytes fromperipheralblood	blood
38	chr2:231264600-231265800	Strong transcription	Adipose Nuclei	Adipose
39	chr2:231264600-231275800	Weak transcription	K562	blood
40	chr2:231265000-231267400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr2:231265000-231275600	Weak transcription	Fetal Heart	heart
42	chr2:231265200-231272800	Weak transcription	HSMM	muscle
43	chr2:231265200-231273000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
44	chr2:231265400-231266600	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr2:231265400-231267000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr2:231265400-231267200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
47	chr2:231265400-231267400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr2:231265400-231270200	Weak transcription	HSMMtube	muscle
49	chr2:231265400-231272800	Weak transcription	Muscle Satellite Cultured Cells	--
50	chr2:231265400-231275400	Weak transcription	HepG2	liver

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