Variant report

Variant	rs543370845
Chromosome Location	chr7:3020557-3020558
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022938	chr7:2899514-3131881	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv605873	chr7:2920067-3204177	Bivalent Enhancer Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1025727	chr7:2938301-3064008	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1026476	chr7:2965034-3311344	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv538656	chr7:2965034-3311344	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv464260	chr7:2966138-3315572	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv605874	chr7:2966138-3315572	Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1018287	chr7:2967524-3298539	Genic enhancers Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
9	nsv538657	chr7:2967524-3298539	Bivalent/Poised TSS Enhancers Strong transcription Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
10	esv3529422	chr7:3020058-3022353	Strong transcription Enhancers Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
11	esv3529423	chr7:3020058-3022353	Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:3017800-3020600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:3017800-3020800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:3018000-3020600	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr7:3018000-3020600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr7:3018000-3020800	Flanking Active TSS	Primary B cells from peripheral blood	blood
6	chr7:3018200-3020800	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
7	chr7:3018600-3020800	Flanking Active TSS	Primary T cells from cord blood	blood
8	chr7:3018600-3020800	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
9	chr7:3019000-3026000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:3019200-3020600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr7:3019200-3021200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr7:3019200-3024800	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr7:3019200-3035800	Weak transcription	Gastric	stomach
14	chr7:3019400-3022200	Weak transcription	Small Intestine	intestine
15	chr7:3019400-3023800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr7:3019600-3020600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:3019600-3020600	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr7:3019600-3020600	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
19	chr7:3019600-3022200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr7:3019800-3020800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr7:3019800-3049000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:3020000-3020600	Enhancers	Esophagus	oesophagus
23	chr7:3020000-3022800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr7:3020000-3025600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
25	chr7:3020000-3025800	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr7:3020000-3026800	Weak transcription	Fetal Intestine Small	intestine
27	chr7:3020200-3020600	Enhancers	Primary B cells from cord blood	blood
28	chr7:3020200-3020600	Enhancers	GM12878-XiMat	blood
29	chr7:3020200-3020800	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
30	chr7:3020200-3021200	Enhancers	Fetal Thymus	thymus
31	chr7:3020200-3021600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr7:3020200-3024000	Enhancers	Primary hematopoietic stem cells	blood
33	chr7:3020400-3020600	Bivalent Enhancer	Fetal Muscle Leg	muscle
34	chr7:3020400-3021200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr7:3020400-3021200	Enhancers	Thymus	Thymus
36	chr7:3020400-3021200	Enhancers	Spleen	Spleen
37	chr7:3020400-3022000	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links