Variant report
| Variant | rs543487591 |
|---|---|
| Chromosome Location | chr8:110510766-110510767 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr8:110510174..110512174-chr8:110514390..110516726,2 | K562 | blood: | |
| 2 | chr10:133996695..133999397-chr8:110508706..110510962,2 | MCF-7 | breast: | |
| 3 | chr8:110492411..110494617-chr8:110510142..110512481,2 | MCF-7 | breast: | |
| 4 | chr8:110506183..110508052-chr8:110509587..110512256,2 | MCF-7 | breast: | |
| 5 | chr8:110510297..110513160-chr8:110550256..110552818,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000147654 | Chromatin interaction |
| ENSG00000235010 | Chromatin interaction |
| ENSG00000205038 | Chromatin interaction |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv891281 | chr8:110450092-110558622 | Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
| 2 | esv2554092 | chr8:110509394-110511181 | Inactive region | TF binding regionChromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv3428944 | chr8:110509626-110511624 | Inactive region | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | esv7340 | chr8:110510055-110510876 | Inactive region | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 5 | esv2027303 | chr8:110510118-110510820 | Inactive region | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
