Variant report

Variant	rs543543286
Chromosome Location	chr5:68608796-68608797
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:68606839..68610803-chr5:68625940..68628885,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000183323	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1018151	chr5:68377118-68667581	Enhancers Active TSS Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv1035004	chr5:68405526-68670101	Strong transcription Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv968921	chr5:68608721-68610701	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68541200-68620400	Weak transcription	Stomach Mucosa	stomach
2	chr5:68564200-68611200	Weak transcription	Fetal Brain Male	brain
3	chr5:68565600-68627400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr5:68566800-68610800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr5:68576200-68609400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr5:68576400-68614400	Weak transcription	Colon Smooth Muscle	Colon
7	chr5:68576400-68627600	Weak transcription	Brain Substantia Nigra	brain
8	chr5:68576400-68627800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr5:68576600-68627800	Weak transcription	Brain Angular Gyrus	brain
10	chr5:68577400-68628200	Weak transcription	Small Intestine	intestine
11	chr5:68577600-68619800	Weak transcription	Fetal Muscle Trunk	muscle
12	chr5:68577600-68627400	Weak transcription	NHEK	skin
13	chr5:68577800-68626600	Weak transcription	A549	lung
14	chr5:68581600-68627600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr5:68581800-68609000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr5:68581800-68609200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr5:68581800-68611000	Weak transcription	Psoas Muscle	Psoas
18	chr5:68581800-68617800	Weak transcription	Brain Hippocampus Middle	brain
19	chr5:68581800-68626800	Weak transcription	Fetal Brain Female	brain
20	chr5:68581800-68627600	Weak transcription	Brain Anterior Caudate	brain
21	chr5:68582800-68622400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr5:68585000-68609000	Weak transcription	Spleen	Spleen
23	chr5:68588600-68615800	Weak transcription	Colonic Mucosa	Colon
24	chr5:68591600-68609200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:68591600-68614000	Weak transcription	Osteobl	bone
26	chr5:68591600-68627600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr5:68596000-68626800	Weak transcription	Skeletal Muscle Male	skeletal muscle
28	chr5:68596600-68612800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
29	chr5:68597000-68608800	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr5:68597000-68611400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:68598600-68611000	Strong transcription	Liver	Liver
32	chr5:68599400-68612000	Weak transcription	HepG2	liver
33	chr5:68599600-68627800	Weak transcription	NH-A	brain
34	chr5:68600600-68610000	Strong transcription	Monocytes-CD14+_RO01746	blood
35	chr5:68600800-68609000	Weak transcription	NHLF	lung
36	chr5:68600800-68610000	Strong transcription	Primary T cells from cord blood	blood
37	chr5:68601400-68627600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
38	chr5:68601800-68608800	Weak transcription	Aorta	Aorta
39	chr5:68602400-68611400	Weak transcription	Fetal Muscle Leg	muscle
40	chr5:68603800-68609200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr5:68604200-68609600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr5:68605200-68610000	Strong transcription	Duodenum Mucosa	Duodenum
43	chr5:68605200-68610000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr5:68605200-68610600	Weak transcription	HMEC	breast
45	chr5:68605400-68609800	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr5:68605600-68609000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
47	chr5:68605600-68609000	Weak transcription	Cortex derived primary cultured neurospheres	brain
48	chr5:68605600-68609000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr5:68605600-68609400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
50	chr5:68605600-68609800	Strong transcription	Fetal Thymus	thymus

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links