Variant report

Variant	rs543550923
Chromosome Location	chr3:160521291-160521292
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532666	chr3:159777847-160703202	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv1009249	chr3:160496237-160627378	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
3	nsv536780	chr3:160496237-160627378	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	esv2476287	chr3:160520638-160522086	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3526137	chr3:160521055-160521516	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
6	esv2121069	chr3:160521073-160521509	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
7	esv3526134	chr3:160521084-160521344	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
8	esv3526136	chr3:160521086-160521475	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
9	esv3526135	chr3:160521087-160521493	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
10	esv3462788	chr3:160521096-160521465	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
11	esv3462787	chr3:160521104-160521481	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
12	esv3462789	chr3:160521137-160521444	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
13	esv3526138	chr3:160521137-160521444	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
14	esv994945	chr3:160521142-160521293	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
15	esv3327228	chr3:160521253-160521444	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:160498400-160522600	Weak transcription	Right Ventricle	heart
2	chr3:160509000-160522600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr3:160513400-160522600	Weak transcription	Pancreas	Pancrea
4	chr3:160514400-160522600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:160515400-160526400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:160518800-160522800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr3:160519600-160522400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr3:160520200-160522600	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:160520200-160522600	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr3:160520200-160522600	Weak transcription	Fetal Brain Female	brain
11	chr3:160520200-160525800	Weak transcription	Liver	Liver
12	chr3:160520200-160526000	Weak transcription	Aorta	Aorta
13	chr3:160520200-160526000	Weak transcription	Brain Angular Gyrus	brain
14	chr3:160520200-160526400	Weak transcription	Stomach Mucosa	stomach
15	chr3:160520400-160522000	Weak transcription	Fetal Heart	heart
16	chr3:160520400-160522400	Weak transcription	Muscle Satellite Cultured Cells	--
17	chr3:160520400-160522400	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:160520400-160522600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:160520400-160522600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr3:160520400-160522600	Weak transcription	Gastric	stomach
21	chr3:160520400-160522600	Weak transcription	Left Ventricle	heart
22	chr3:160520400-160522600	Weak transcription	Lung	lung
23	chr3:160520400-160522600	Weak transcription	NHDF-Ad	bronchial
24	chr3:160520400-160526400	Weak transcription	Brain Anterior Caudate	brain
25	chr3:160520400-160529600	Weak transcription	Colonic Mucosa	Colon
26	chr3:160520600-160522400	Weak transcription	Adipose Nuclei	Adipose
27	chr3:160520800-160522600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:160521000-160522000	Weak transcription	Colon Smooth Muscle	Colon
29	chr3:160521000-160522200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:160521000-160522400	Weak transcription	HUES6 Cell Line	embryonic stem cell
31	chr3:160521000-160522400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:160521000-160522400	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr3:160521000-160522400	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr3:160521000-160522400	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:160521000-160522600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr3:160521000-160523600	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr3:160521000-160523600	Weak transcription	Placenta	Placenta
38	chr3:160521000-160523800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:160521000-160523800	Weak transcription	Psoas Muscle	Psoas
40	chr3:160521000-160524000	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr3:160521000-160526000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr3:160521000-160526000	Weak transcription	Duodenum Smooth Muscle	Duodenum
43	chr3:160521000-160526000	Weak transcription	Right Atrium	heart
44	chr3:160521000-160526000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr3:160521000-160526400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:160521200-160523600	Weak transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links