Variant report

Variant	rs543552413
Chromosome Location	chr2:35007266-35007267
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:35006274..35008792-chr8:67342394..67345182,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000147576	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv873804	chr2:34156867-35047107	Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv873810	chr2:34456200-35047107	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv873821	chr2:34738616-35416075	Enhancers Weak transcription Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv1003361	chr2:34746445-35202302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv873825	chr2:34892832-35115848	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1003322	chr2:34898412-35216795	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv581375	chr2:34912850-35032910	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	n/a
8	nsv873828	chr2:34919515-35022419	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
9	nsv1010863	chr2:34922329-35052108	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
10	nsv1002915	chr2:34923003-35052108	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	n/a
11	nsv873829	chr2:34928080-35022419	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
12	nsv430679	chr2:34946679-35025804	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	n/a
13	nsv1003970	chr2:34956712-35013666	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
14	nsv1008947	chr2:34959421-35019746	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
15	nsv581384	chr2:34965789-35013851	Enhancers Weak transcription	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
16	nsv873830	chr2:34972791-35047107	Enhancers Weak transcription Active TSS Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
17	nsv1008320	chr2:34982747-35010043	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	nsv1003857	chr2:34986833-35010043	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
19	nsv1002310	chr2:34986833-35019746	Weak transcription Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
20	nsv524038	chr2:34990937-35073607	Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
21	esv3369851	chr2:35006048-35009046	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
22	esv3516877	chr2:35006498-35008896	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
23	nsv511776	chr2:35006806-35008433	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
24	esv2433782	chr2:35006838-35008507	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
25	esv2293833	chr2:35007045-35008008	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
26	esv3457513	chr2:35007112-35007929	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
27	esv3516878	chr2:35007128-35007906	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
28	esv3516873	chr2:35007137-35007939	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
29	esv3516871	chr2:35007162-35007860	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
30	esv3457512	chr2:35007167-35007895	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
31	esv3457510	chr2:35007172-35007891	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
32	esv3457511	chr2:35007182-35007850	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
33	esv3516872	chr2:35007187-35007875	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
34	esv3516876	chr2:35007189-35007872	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
35	esv3385836	chr2:35007207-35007845	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
36	esv3457509	chr2:35007232-35007830	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
37	esv3516875	chr2:35007244-35007825	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
38	esv3457514	chr2:35007246-35007827	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
39	esv3516879	chr2:35007246-35007827	Inactive region	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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