Variant report

Variant	rs543561489
Chromosome Location	chr5:15503391-15503392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv516929	chr5:15087791-15870300	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1023068	chr5:15095221-15863583	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv869040	chr5:15097602-15866117	Active TSS Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv530222	chr5:15151662-15851485	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv965544	chr5:15502274-15507654	Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:15501600-15512000	Weak transcription	Small Intestine	intestine
2	chr5:15501800-15511000	Weak transcription	Lung	lung
3	chr5:15501800-15523800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr5:15502000-15505000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:15502000-15511600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr5:15502000-15515000	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr5:15502000-15522200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr5:15502400-15509200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr5:15502600-15503400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr5:15502600-15503600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr5:15502600-15510800	Weak transcription	Aorta	Aorta
12	chr5:15502600-15522400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr5:15502600-15535400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr5:15502800-15503400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr5:15502800-15503400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr5:15502800-15503400	Flanking Active TSS	Fetal Heart	heart
17	chr5:15502800-15503400	Enhancers	Fetal Lung	lung
18	chr5:15502800-15503600	Weak transcription	Brain Anterior Caudate	brain
19	chr5:15502800-15503600	Enhancers	Left Ventricle	heart
20	chr5:15502800-15503600	Weak transcription	Dnd41	blood
21	chr5:15502800-15503800	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr5:15502800-15503800	Enhancers	Brain Hippocampus Middle	brain
23	chr5:15502800-15504200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr5:15502800-15504400	Weak transcription	Rectal Smooth Muscle	rectum
25	chr5:15502800-15505200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr5:15502800-15506200	Weak transcription	Fetal Kidney	kidney
27	chr5:15502800-15506800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr5:15502800-15507000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr5:15502800-15509800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr5:15502800-15510600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr5:15502800-15513600	Weak transcription	Right Ventricle	heart
32	chr5:15502800-15514600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr5:15502800-15521400	Weak transcription	Stomach Smooth Muscle	stomach
34	chr5:15503000-15503600	Weak transcription	HUES64 Cell Line	embryonic stem cell
35	chr5:15503000-15503600	Weak transcription	Fetal Muscle Leg	muscle
36	chr5:15503000-15503600	Genic enhancers	Fetal Stomach	stomach
37	chr5:15503000-15503800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr5:15503000-15503800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr5:15503000-15503800	Enhancers	HUVEC	blood vessel
40	chr5:15503000-15504000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr5:15503000-15505400	Enhancers	Ovary	ovary
42	chr5:15503000-15506800	Weak transcription	Adipose Nuclei	Adipose
43	chr5:15503000-15507000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
44	chr5:15503000-15509000	Weak transcription	NHDF-Ad	bronchial
45	chr5:15503000-15509200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr5:15503000-15509200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr5:15503000-15509200	Weak transcription	NHLF	lung
48	chr5:15503000-15509200	Weak transcription	Osteobl	bone
49	chr5:15503000-15510400	Weak transcription	NH-A	brain
50	chr5:15503200-15503400	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links