Variant report

Variant	rs543562282
Chromosome Location	chr10:4003303-4003304
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:3826047..3829382-chr10:4003053..4005347,3	MCF-7	breast:
2	chr10:4002614..4004316-chr10:4008633..4010468,2	K562	blood:
3	chr10:3998272..4000817-chr10:4003234..4005418,4	MCF-7	breast:
4	chr10:3826407..3828604-chr10:4003074..4005600,3	K562	blood:

Variant related genes	Relation type
ENSG00000067082	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043680	chr10:3551191-4038002	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
2	nsv1051297	chr10:3908706-4277678	Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases
3	nsv894784	chr10:3985194-4051081	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	nsv5609	chr10:4002849-4040114	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:3998800-4003400	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr10:4001200-4006000	Enhancers	Primary T cells fromperipheralblood	blood
3	chr10:4001200-4006200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
4	chr10:4001400-4004200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr10:4001600-4003600	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr10:4001600-4003600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr10:4001600-4003600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:4001600-4003800	Enhancers	Primary B cells from cord blood	blood
9	chr10:4001600-4004000	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr10:4001600-4004000	Enhancers	Primary B cells from peripheral blood	blood
11	chr10:4001600-4004200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr10:4001600-4004200	Flanking Active TSS	Dnd41	blood
13	chr10:4001800-4003600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
14	chr10:4001800-4003600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr10:4001800-4003600	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr10:4001800-4004000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr10:4001800-4004200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr10:4001800-4004200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr10:4001800-4004400	Enhancers	Primary T helper cells fromperipheralblood	blood
20	chr10:4001800-4004400	Enhancers	Fetal Thymus	thymus
21	chr10:4002000-4003600	Enhancers	H9 Cell Line	embryonic stem cell
22	chr10:4002000-4003600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr10:4002000-4003600	Enhancers	Aorta	Aorta
24	chr10:4002000-4003600	Enhancers	Fetal Muscle Leg	muscle
25	chr10:4002000-4004400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr10:4002000-4004400	Enhancers	Primary T killer memory cells from peripheral blood	blood
27	chr10:4002200-4004000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr10:4002200-4004200	Enhancers	Primary T cells from cord blood	blood
29	chr10:4002200-4004200	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr10:4002200-4004600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr10:4002200-4005600	Enhancers	Primary T helper naive cells from peripheral blood	blood
32	chr10:4002200-4022000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr10:4002400-4004000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
34	chr10:4002400-4005200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr10:4002400-4005400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr10:4002400-4005400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr10:4002400-4005400	Weak transcription	NHEK	skin
38	chr10:4002600-4004600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr10:4002800-4003600	Enhancers	Primary hematopoietic stem cells short term culture	blood
40	chr10:4002800-4004000	Enhancers	Primary hematopoietic stem cells	blood
41	chr10:4003000-4003600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr10:4003000-4003600	Enhancers	Thymus	Thymus
43	chr10:4003000-4003800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr10:4003200-4003400	Enhancers	Small Intestine	intestine

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