Variant report

Variant	rs543564141
Chromosome Location	chr14:79485342-79485343
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv917249	chr14:79388181-79574717	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1037112	chr14:79412455-79527656	Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1046464	chr14:79478352-79514789	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
6	nsv1036542	chr14:79478352-79518230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription	lncRNA	n/a	inside rSNPs	diseases
7	nsv948724	chr14:79484233-79614043	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79478200-79485400	Weak transcription	Colon Smooth Muscle	Colon
2	chr14:79482400-79485800	Enhancers	Osteobl	bone
3	chr14:79482600-79486200	Enhancers	HSMM	muscle
4	chr14:79482600-79486200	Enhancers	NHLF	lung
5	chr14:79482800-79486000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr14:79482800-79486200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr14:79483800-79485400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:79483800-79487800	Weak transcription	Fetal Muscle Leg	muscle
9	chr14:79484200-79485400	Weak transcription	NH-A	brain
10	chr14:79484200-79487400	Weak transcription	HSMMtube	muscle
11	chr14:79484400-79485800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr14:79484800-79485600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr14:79484800-79485600	Enhancers	NHDF-Ad	bronchial
14	chr14:79485000-79485600	Enhancers	NHEK	skin
15	chr14:79485200-79485400	Enhancers	Rectal Smooth Muscle	rectum
16	chr14:79485200-79485600	Enhancers	HMEC	breast
17	chr14:79485200-79485600	Enhancers	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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