Variant report

Variant	rs543584077
Chromosome Location	chr7:140353434-140353435
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:140352705..140358390-chr7:140370477..140374283,7	MCF-7	breast:
2	chr7:140217094..140218389-chr7:140352924..140354007,12	K562	blood:
3	chr7:140217465..140218703-chr7:140352465..140353922,9	MCF-7	breast:
4	chr7:140347403..140349071-chr7:140352045..140353998,2	MCF-7	breast:
5	chr7:140216203..140218694-chr7:140353097..140355919,3	MCF-7	breast:
6	chr7:140174451..140177169-chr7:140352584..140355463,2	MCF-7	breast:
7	chr7:140217266..140218508-chr7:140352702..140354109,29	MCF-7	breast:
8	chr7:140216273..140216881-chr7:140352919..140353865,2	K562	blood:
9	chr7:140175323..140176224-chr7:140353090..140353829,3	MCF-7	breast:
10	chr7:140175272..140176552-chr7:140352943..140353862,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000133597	Chromatin interaction
ENSG00000146966	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831157	chr7:140241339-140426876	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	esv3371832	chr7:140352483-140356781	Active TSS Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140341800-140355800	Weak transcription	Right Atrium	heart
2	chr7:140347000-140355800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:140349600-140355400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr7:140349600-140355400	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr7:140351200-140354200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr7:140351800-140356000	Weak transcription	HMEC	breast
7	chr7:140351800-140356200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr7:140351800-140358000	Weak transcription	Gastric	stomach
9	chr7:140352000-140356000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr7:140352800-140353600	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr7:140353000-140353600	Enhancers	Primary B cells from peripheral blood	blood
12	chr7:140353000-140353600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
13	chr7:140353000-140353600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr7:140353000-140353600	Enhancers	Fetal Brain Male	brain
15	chr7:140353000-140353600	Enhancers	Fetal Stomach	stomach
16	chr7:140353000-140353800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr7:140353000-140353800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr7:140353000-140353800	Enhancers	Fetal Muscle Leg	muscle
19	chr7:140353000-140354000	Enhancers	Adipose Nuclei	Adipose
20	chr7:140353000-140354000	Enhancers	Fetal Muscle Trunk	muscle
21	chr7:140353000-140354400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr7:140353000-140354400	Enhancers	Fetal Heart	heart
23	chr7:140353000-140354600	Enhancers	Skeletal Muscle Female	skeletal muscle
24	chr7:140353200-140353600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr7:140353200-140353600	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr7:140353200-140353600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
27	chr7:140353200-140353600	Weak transcription	NHLF	lung
28	chr7:140353200-140353800	Enhancers	Stomach Mucosa	stomach
29	chr7:140353200-140354400	Enhancers	Liver	Liver
30	chr7:140353400-140353600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
31	chr7:140353400-140353600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr7:140353400-140353600	Enhancers	Brain Angular Gyrus	brain
33	chr7:140353400-140353600	Enhancers	Brain Anterior Caudate	brain
34	chr7:140353400-140353600	Enhancers	Brain Cingulate Gyrus	brain
35	chr7:140353400-140353600	Enhancers	Brain Hippocampus Middle	brain
36	chr7:140353400-140353600	Enhancers	Duodenum Smooth Muscle	Duodenum
37	chr7:140353400-140353600	Enhancers	Rectal Smooth Muscle	rectum
38	chr7:140353400-140354000	Enhancers	Stomach Smooth Muscle	stomach
39	chr7:140353400-140355400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
40	chr7:140353400-140355400	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr7:140353400-140355600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr7:140353400-140355600	Weak transcription	Colonic Mucosa	Colon
43	chr7:140353400-140355600	Weak transcription	Duodenum Mucosa	Duodenum
44	chr7:140353400-140355800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:140353400-140355800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr7:140353400-140355800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:140353400-140355800	Weak transcription	Left Ventricle	heart
48	chr7:140353400-140355800	Weak transcription	Spleen	Spleen
49	chr7:140353400-140355800	Weak transcription	Dnd41	blood
50	chr7:140353400-140355800	Weak transcription	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links