Variant report

Variant	rs543727054
Chromosome Location	chr9:16106906-16106907
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949463	chr9:15970668-16377360	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv429999	chr9:16102066-16389100	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv892638	chr9:16106659-16172580	Bivalent/Poised TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:16099200-16107400	Enhancers	Fetal Muscle Leg	muscle
2	chr9:16099400-16107000	Enhancers	Ovary	ovary
3	chr9:16099800-16107400	Enhancers	Fetal Stomach	stomach
4	chr9:16100400-16107200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr9:16102000-16108600	Enhancers	Fetal Lung	lung
6	chr9:16102600-16107000	Enhancers	NHLF	lung
7	chr9:16103600-16107000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr9:16105000-16107400	Enhancers	Fetal Muscle Trunk	muscle
9	chr9:16105600-16107000	Enhancers	Brain Substantia Nigra	brain
10	chr9:16105800-16107000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr9:16105800-16107000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:16105800-16107000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr9:16105800-16107000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr9:16106000-16107000	Enhancers	H1 Cell Line	embryonic stem cell
15	chr9:16106000-16107000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr9:16106000-16107000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr9:16106000-16107200	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr9:16106200-16107000	Enhancers	iPS-20b Cell Line	embryonic stem cell
19	chr9:16106200-16107000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:16106200-16107000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
21	chr9:16106200-16107200	Enhancers	Adipose Nuclei	Adipose
22	chr9:16106800-16107400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:16106800-16109200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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