Variant report

Variant	rs543752871
Chromosome Location	chr9:7800357-7800358
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr9:7798715-7800380	IMR90	lung:	n/a	chr9:7799386-7799395 chr9:7799384-7799393 chr9:7799344-7799353
2	NRF1	chr9:7799507-7800454	SK-N-SH	brain:	n/a	n/a
3	HCFC1	chr9:7798878-7800523	Hela-S3	cervix:	n/a	n/a
4	MTA3	chr9:7799123-7800380	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:7785236..7788053-chr9:7798343..7800585,2	K562	blood:
2	chr9:7785236..7787094-chr9:7798343..7800559,2	K562	blood:

Variant related genes	Relation type
TMEM261	TF binding region
ENSG00000273056	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033077	chr9:7358832-7990735	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv539977	chr9:7358832-7990735	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
3	nsv613266	chr9:7588854-7901308	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv995116	chr9:7682729-8065192	Strong transcription Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv892213	chr9:7770942-7856992	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv892214	chr9:7774180-7822486	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv892215	chr9:7799787-7889991	Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:7798200-7800400	Active TSS	K562	blood
2	chr9:7798600-7800400	Active TSS	Thymus	Thymus
3	chr9:7799000-7800400	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr9:7799000-7800400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
5	chr9:7799000-7800400	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr9:7799000-7800400	Active TSS	A549	lung
7	chr9:7799000-7800400	Active TSS	GM12878-XiMat	blood
8	chr9:7799000-7800400	Active TSS	NHEK	skin
9	chr9:7799200-7800400	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:7799200-7800400	Active TSS	Primary hematopoietic stem cells short term culture	blood
11	chr9:7799200-7800400	Active TSS	Brain Angular Gyrus	brain
12	chr9:7799200-7800400	Active TSS	Brain Anterior Caudate	brain
13	chr9:7799200-7800400	Active TSS	Duodenum Mucosa	Duodenum
14	chr9:7799600-7800400	Active TSS	Monocytes-CD14+_RO01746	blood
15	chr9:7799800-7800400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
16	chr9:7799800-7800400	Enhancers	Primary T killer memory cells from peripheral blood	blood
17	chr9:7799800-7801600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr9:7799800-7802200	Weak transcription	HUES48 Cell Line	embryonic stem cell
19	chr9:7800000-7800400	Enhancers	Primary monocytes fromperipheralblood	blood
20	chr9:7800000-7800400	Flanking Active TSS	Primary T cells from cord blood	blood
21	chr9:7800000-7800400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
22	chr9:7800000-7800400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:7800000-7800400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
24	chr9:7800000-7800400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr9:7800000-7800400	Flanking Active TSS	Dnd41	blood
26	chr9:7800000-7800800	Enhancers	Fetal Thymus	thymus
27	chr9:7800000-7809800	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr9:7800200-7800400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
29	chr9:7800200-7800400	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr9:7800200-7800400	Enhancers	Primary T helper cells fromperipheralblood	blood
31	chr9:7800200-7800400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr9:7800200-7800400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr9:7800200-7800400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr9:7800200-7800400	Enhancers	Liver	Liver
35	chr9:7800200-7800400	Flanking Active TSS	Brain Hippocampus Middle	brain
36	chr9:7800200-7800400	Enhancers	Brain Substantia Nigra	brain
37	chr9:7800200-7800400	Enhancers	Hela-S3	cervix
38	chr9:7800200-7800400	Enhancers	HMEC	breast
39	chr9:7800200-7800400	Enhancers	NH-A	brain
40	chr9:7800200-7800400	Enhancers	Osteobl	bone
41	chr9:7800200-7802000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
42	chr9:7800200-7802000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr9:7800200-7802000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr9:7800200-7810600	Weak transcription	Stomach Mucosa	stomach

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