Variant report

Variant	rs543774073
Chromosome Location	chr15:55503509-55503510
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:55502637..55507829-chr15:55507957..55511534,4	MCF-7	breast:
2	chr15:55488317..55491579-chr15:55501093..55504631,4	K562	blood:

Variant related genes	Relation type
ENSG00000137876	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043176	chr15:55010228-55563000	Genic enhancers Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1042741	chr15:55068022-55622497	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
3	nsv1039471	chr15:55137606-55552555	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
4	nsv917323	chr15:55290499-56041334	Genic enhancers Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	57 gene(s)	inside rSNPs	diseases
5	nsv1043789	chr15:55400872-56092454	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
6	nsv1049977	chr15:55502508-55555694	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:55489600-55504000	Weak transcription	Spleen	Spleen
2	chr15:55489600-55513200	Weak transcription	Lung	lung
3	chr15:55489800-55540200	Weak transcription	Esophagus	oesophagus
4	chr15:55490000-55509600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:55490000-55510000	Weak transcription	NHLF	lung
6	chr15:55490000-55513000	Weak transcription	Fetal Intestine Large	intestine
7	chr15:55490000-55513200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr15:55490000-55513200	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr15:55490000-55513200	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr15:55490000-55517200	Weak transcription	Aorta	Aorta
11	chr15:55490000-55529400	Weak transcription	Rectal Smooth Muscle	rectum
12	chr15:55490000-55562800	Weak transcription	Ovary	ovary
13	chr15:55490200-55510000	Weak transcription	Fetal Kidney	kidney
14	chr15:55490200-55510200	Weak transcription	Fetal Lung	lung
15	chr15:55490200-55511400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:55490200-55511400	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr15:55490200-55511400	Weak transcription	Osteobl	bone
18	chr15:55490200-55513200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr15:55490200-55513800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr15:55490200-55514000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:55490400-55510000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr15:55490400-55512600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:55490600-55510200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr15:55490800-55504200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr15:55491000-55513600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
26	chr15:55497800-55510000	Weak transcription	Primary B cells from cord blood	blood
27	chr15:55497800-55511200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr15:55497800-55513000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
29	chr15:55497800-55513000	Weak transcription	Hela-S3	cervix
30	chr15:55497800-55514000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr15:55497800-55518400	Weak transcription	Gastric	stomach
32	chr15:55498000-55505000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:55498000-55509400	Weak transcription	Stomach Mucosa	stomach
34	chr15:55498000-55509600	Weak transcription	Primary B cells from peripheral blood	blood
35	chr15:55498000-55509600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr15:55498000-55510000	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr15:55498000-55510000	Weak transcription	Liver	Liver
38	chr15:55498000-55510200	Weak transcription	Primary hematopoietic stem cells	blood
39	chr15:55498000-55510200	Weak transcription	Primary T helper cells PMA-I stimulated	--
40	chr15:55498000-55510400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
41	chr15:55498000-55512800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr15:55498000-55512800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr15:55498000-55513200	Weak transcription	Primary T cells from cord blood	blood
44	chr15:55498000-55513400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr15:55498000-55514200	Weak transcription	Stomach Smooth Muscle	stomach
46	chr15:55498200-55509600	Weak transcription	Primary T cells fromperipheralblood	blood
47	chr15:55498400-55505800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr15:55498400-55512400	Weak transcription	Fetal Stomach	stomach
49	chr15:55499800-55510200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:55501000-55504200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links