Variant report

Variant	rs543805786
Chromosome Location	chr6:131383474-131383475
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:131383272..131386235-chr6:131948272..131950497,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000154269	Chromatin interaction
ENSG00000112282	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032955	chr6:131298803-131818502	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv538443	chr6:131298803-131818502	Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv3370421	chr6:131383359-131385457	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:131381600-131384800	Active TSS	Rectal Smooth Muscle	rectum
2	chr6:131381600-131385000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr6:131381800-131383600	Flanking Active TSS	Adipose Nuclei	Adipose
4	chr6:131381800-131384600	Active TSS	NHLF	lung
5	chr6:131381800-131384800	Active TSS	Brain Angular Gyrus	brain
6	chr6:131381800-131385000	Active TSS	Ovary	ovary
7	chr6:131381800-131385200	Active TSS	Brain Anterior Caudate	brain
8	chr6:131382000-131384800	Active TSS	A549	lung
9	chr6:131382000-131385000	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr6:131382000-131385000	Active TSS	Brain Substantia Nigra	brain
11	chr6:131382200-131383600	Flanking Active TSS	Fetal Muscle Leg	muscle
12	chr6:131382200-131384800	Active TSS	Brain Cingulate Gyrus	brain
13	chr6:131382200-131384800	Active TSS	Duodenum Smooth Muscle	Duodenum
14	chr6:131382200-131384800	Active TSS	Fetal Muscle Trunk	muscle
15	chr6:131382200-131385000	Active TSS	Right Atrium	heart
16	chr6:131382200-131385200	Active TSS	Stomach Smooth Muscle	stomach
17	chr6:131382400-131383600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:131382400-131383600	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr6:131382400-131383600	Flanking Active TSS	Dnd41	blood
20	chr6:131382400-131384600	Active TSS	Colonic Mucosa	Colon
21	chr6:131382400-131384800	Active TSS	Colon Smooth Muscle	Colon
22	chr6:131382600-131383600	Flanking Active TSS	Liver	Liver
23	chr6:131382600-131383800	Flanking Active TSS	Primary T cells from cord blood	blood
24	chr6:131382600-131383800	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
25	chr6:131382600-131383800	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr6:131382600-131384200	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
27	chr6:131382600-131384800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr6:131382600-131384800	Active TSS	Fetal Intestine Small	intestine
29	chr6:131382600-131384800	Active TSS	Left Ventricle	heart
30	chr6:131382600-131385000	Active TSS	Fetal Kidney	kidney
31	chr6:131382600-131385200	Active TSS	Pancreatic Islets	Pancreatic Islet
32	chr6:131382600-131385200	Active TSS	Right Ventricle	heart
33	chr6:131382800-131383600	Flanking Active TSS	Primary B cells from peripheral blood	blood
34	chr6:131382800-131383600	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
35	chr6:131382800-131383600	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr6:131382800-131383600	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
37	chr6:131382800-131383600	Flanking Active TSS	Fetal Thymus	thymus
38	chr6:131382800-131384200	Flanking Active TSS	Primary B cells from cord blood	blood
39	chr6:131382800-131384200	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr6:131382800-131384400	Bivalent/Poised TSS	Brain Germinal Matrix	brain
41	chr6:131382800-131384600	Active TSS	K562	blood
42	chr6:131382800-131384800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr6:131382800-131385000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr6:131382800-131385200	Active TSS	Aorta	Aorta
45	chr6:131383000-131383600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
46	chr6:131383000-131383600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
47	chr6:131383000-131383600	Flanking Active TSS	Primary T cells fromperipheralblood	blood
48	chr6:131383000-131383600	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
49	chr6:131383000-131383600	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
50	chr6:131383000-131383600	Enhancers	Fetal Heart	heart

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