Variant report

Variant	rs543811833
Chromosome Location	chr9:102590281-102590282
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:102589376..102591940-chr9:102594219..102596621,2	MCF-7	breast:
2	chr9:102587323..102589570-chr9:102589778..102591826,2	MCF-7	breast:
3	chr9:102581880..102584384-chr9:102587876..102590490,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000237461	Chromatin interaction
ENSG00000119508	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529618	chr9:102227922-103044018	Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv531599	chr9:102227922-103156864	Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
3	nsv528025	chr9:102540386-102613672	Bivalent/Poised TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
4	nsv893622	chr9:102543355-102595685	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
5	nsv831668	chr9:102568169-102747293	Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	esv3433859	chr9:102589981-102592279	Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Enhancers Genic enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102586800-102609200	Weak transcription	Aorta	Aorta
2	chr9:102587000-102613800	Weak transcription	Hela-S3	cervix
3	chr9:102587400-102608200	Weak transcription	Psoas Muscle	Psoas
4	chr9:102587600-102590800	Weak transcription	Pancreas	Pancrea
5	chr9:102587800-102590400	Weak transcription	NHLF	lung
6	chr9:102587800-102590800	Bivalent Enhancer	Fetal Brain Male	brain
7	chr9:102588200-102590400	Weak transcription	Gastric	stomach
8	chr9:102588200-102590400	Weak transcription	Right Ventricle	heart
9	chr9:102588200-102590400	Weak transcription	Spleen	Spleen
10	chr9:102588200-102591400	Bivalent Enhancer	Primary Natural Killer cells fromperipheralblood	blood
11	chr9:102588200-102595400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:102589200-102591200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr9:102589200-102592600	Strong transcription	Left Ventricle	heart
14	chr9:102589800-102590400	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
15	chr9:102589800-102591200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:102589800-102592600	Strong transcription	Stomach Smooth Muscle	stomach
17	chr9:102590000-102592600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr9:102590200-102590400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
19	chr9:102590200-102590400	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
20	chr9:102590200-102590600	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:102590200-102590600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
22	chr9:102590200-102591400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
23	chr9:102590200-102591400	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
24	chr9:102590200-102591400	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
25	chr9:102590200-102591400	Bivalent Enhancer	Primary B cells from peripheral blood	blood
26	chr9:102590200-102591600	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
27	chr9:102590200-102592200	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr9:102590200-102592400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr9:102590200-102592400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
30	chr9:102590200-102592600	Strong transcription	Skeletal Muscle Male	skeletal muscle

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