Variant report

Variant	rs543816420
Chromosome Location	chr15:72100587-72100588
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr15:72100158-72100640	HEK293-T-REx	kidney:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:72100575-72100625	HepG2	liver:	n/a
2	chr15:72100575-72100625	NH-A	brain:	n/a
3	chr15:72100575-72100625	GM19239	blood:	n/a
4	chr15:72100575-72100625	HMEC	breast:	n/a
5	chr15:72100575-72100625	NT2-D1	testis:	n/a
6	chr15:72100575-72100625	Hepatocyte	liver:	n/a
7	chr15:72100575-72100625	RPTEC	kidney:	n/a
8	chr15:72100575-72100625	AG04450	lung:	fetal
9	chr15:72100575-72100625	ECC-1	luminal epithelium:	n/a
10	chr15:72100575-72100625	SK-N-SH	brain:	n/a
11	chr15:72100575-72100625	AoSMC	blood vessel:	n/a
12	chr15:72100575-72100625	BJ	skin:	n/a
13	chr15:72100575-72100625	LNCaP	prostate:	n/a
14	chr15:72100575-72100625	HEK293	kidney:	embryo
15	chr15:72100575-72100625	SK-N-SH_RA	brain:	n/a
16	chr15:72100575-72100625	HPAEpiC	pulmonary alveolar:	n/a
17	chr15:72100575-72100625	MCF-7	breast:	n/a
18	chr15:72100575-72100625	HCT-116	colon:	n/a
19	chr15:72100575-72100625	HIPEpiC	eye:	n/a
20	chr15:72100575-72100625	SAEC	small airway:	n/a
21	chr15:72100575-72100625	ProgFib	skin:	n/a
22	chr15:72100575-72100625	HCF	heart:	n/a
23	chr15:72100575-72100625	SK-N-MC	brain:	n/a
24	chr15:72100575-72100625	PANC-1	pancreas:	n/a
25	chr15:72100575-72100625	NHDF-neo	bronchial:	n/a
26	chr15:72100575-72100625	Jurkat	blood:	n/a
27	chr15:72100575-72100625	HUVEC	blood vessel:	n/a
28	chr15:72100575-72100625	BE2_C	brain:	n/a
29	chr15:72100575-72100625	SKMC	muscle:	n/a
30	chr15:72100575-72100625	PrEC	prostate:	n/a
31	chr15:72100575-72100625	Hela-S3	cervix:	n/a
32	chr15:72100575-72100625	T-47D	breast:	n/a
33	chr15:72100575-72100625	NHBE	bronchial:	n/a
34	chr15:72100575-72100625	IMR90	lung:	fetal
35	chr15:72100575-72100625	AG09309	skin:	n/a
36	chr15:72100575-72100625	AG09319	gingival:	n/a
37	chr15:72100575-72100625	HEEpiC	esophagus:	n/a
38	chr15:72100575-72100625	HAEpiC	amniotic membrane:	n/a
39	chr15:72100575-72100625	HNPCEpiC	eye:	n/a
40	chr15:72100575-72100625	HRE	kidney:	n/a
41	chr15:72100575-72100625	HRCEpiC	kidney:	n/a
42	chr15:72100575-72100625	HCPEpiC	choroid plexus:	n/a
43	chr15:72100575-72100625	U87	brain:	n/a
44	chr15:72100575-72100625	AG04449	skin:	fetal
45	chr15:72100575-72100625	H1-hESC	embryonic stem cell:	embryo
46	chr15:72100575-72100625	NB4	blood:	n/a
47	chr15:72100575-72100625	GM12878	blood:	n/a
48	chr15:72100575-72100625	GM12891	blood:	n/a
49	chr15:72100575-72100625	A549	lung:	n/a
50	chr15:72100575-72100625	PFSK-1	brain:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:72095402..72097708-chr15:72097755..72100613,2	MCF-7	breast:
2	chr15:72097461..72102477-chr15:72104726..72109263,4	MCF-7	breast:
3	chr15:72093317..72095057-chr15:72097968..72100782,2	MCF-7	breast:

No data

Variant related genes	Relation type
NR2E3	TF binding region
NR2E3	CpG island

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904334	chr15:71737376-72177659	Strong transcription Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1036938	chr15:71948106-72272855	Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv3331306	chr15:72049818-72427559	Strong transcription ZNF genes & repeats Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
4	esv3433206	chr15:72049838-72427529	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
5	nsv827383	chr15:72100044-72107239	Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72096000-72100600	Enhancers	Fetal Muscle Trunk	muscle
2	chr15:72096000-72105600	Enhancers	Fetal Muscle Leg	muscle
3	chr15:72096200-72103400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr15:72097200-72100600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr15:72098400-72100600	Enhancers	Fetal Lung	lung
6	chr15:72098400-72100600	Enhancers	A549	lung
7	chr15:72098400-72100800	Enhancers	Placenta	Placenta
8	chr15:72098600-72100600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr15:72098600-72100600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr15:72098600-72100600	Enhancers	NH-A	brain
11	chr15:72098600-72100600	Enhancers	NHLF	lung
12	chr15:72098600-72100600	Enhancers	Osteobl	bone
13	chr15:72098600-72100800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr15:72098600-72100800	Enhancers	Muscle Satellite Cultured Cells	--
15	chr15:72098600-72101400	Enhancers	H1 Cell Line	embryonic stem cell
16	chr15:72098600-72104000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr15:72098800-72100600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
18	chr15:72098800-72100800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:72098800-72101000	Enhancers	HSMM	muscle
20	chr15:72098800-72101200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr15:72098800-72101400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr15:72099000-72100800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:72099000-72100800	Enhancers	HSMMtube	muscle
24	chr15:72099000-72101000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr15:72099000-72101200	Enhancers	Right Atrium	heart
26	chr15:72099200-72102600	Weak transcription	Fetal Intestine Large	intestine
27	chr15:72099400-72100600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
28	chr15:72099400-72100600	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr15:72099400-72100600	Enhancers	Breast Myoepithelial Primary Cells	Breast
30	chr15:72099400-72100600	Genic enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr15:72099400-72100600	Enhancers	Spleen	Spleen
32	chr15:72099400-72101000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
33	chr15:72100000-72100600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr15:72100000-72100800	Enhancers	iPS-18 Cell Line	embryonic stem cell
35	chr15:72100000-72101000	Weak transcription	Brain Germinal Matrix	brain
36	chr15:72100000-72103400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr15:72100200-72100600	Enhancers	H9 Cell Line	embryonic stem cell
38	chr15:72100200-72100600	Enhancers	Fetal Kidney	kidney
39	chr15:72100200-72100600	Enhancers	NHDF-Ad	bronchial
40	chr15:72100200-72100800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr15:72100400-72100600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
42	chr15:72100400-72100600	Enhancers	iPS-20b Cell Line	embryonic stem cell
43	chr15:72100400-72100600	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr15:72100400-72100600	Enhancers	Lung	lung
45	chr15:72100400-72100800	Flanking Active TSS	Fetal Heart	heart
46	chr15:72100400-72101200	Enhancers	Right Ventricle	heart
47	chr15:72100400-72112000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

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