Variant report

Variant	rs543819796
Chromosome Location	chr8:117949868-117949869
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	HA-E2F1	chr8:117949690-117951208	MCF-7	breast:	n/a	chr8:117951001-117951010
2	ZNF263	chr8:117949825-117951164	HEK293-T-REx	kidney:	n/a	chr8:117950282-117950291 chr8:117951043-117951052

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr8:117949839-117949889	MCF-7	breast:	n/a
2	chr8:117949839-117949889	HPAEpiC	pulmonary alveolar:	n/a
3	chr8:117949839-117949889	SK-N-SH_RA	brain:	n/a
4	chr8:117949839-117949889	GM12878	blood:	n/a
5	chr8:117949839-117949889	HAEpiC	amniotic membrane:	n/a
6	chr8:117949839-117949889	U87	brain:	n/a
7	chr8:117949839-117949889	MCF10A-Er-Src	breast:	n/a
8	chr8:117949839-117949889	ProgFib	skin:	n/a
9	chr8:117949839-117949889	HIPEpiC	eye:	n/a
10	chr8:117949839-117949889	PrEC	prostate:	n/a
11	chr8:117949839-117949889	SKMC	muscle:	n/a
12	chr8:117949839-117949889	Hela-S3	cervix:	n/a
13	chr8:117949839-117949889	GM12891	blood:	n/a
14	chr8:117949839-117949889	SK-N-MC	brain:	n/a
15	chr8:117949839-117949889	HRE	kidney:	n/a
16	chr8:117949839-117949889	SAEC	small airway:	n/a
17	chr8:117949839-117949889	PFSK-1	brain:	n/a
18	chr8:117949839-117949889	K562	blood:	n/a
19	chr8:117949839-117949889	BJ	skin:	n/a
20	chr8:117949839-117949889	IMR90	lung:	fetal
21	chr8:117949839-117949889	HUVEC	blood vessel:	n/a
22	chr8:117949839-117949889	AG04449	skin:	fetal
23	chr8:117949839-117949889	NHBE	bronchial:	n/a
24	chr8:117949839-117949889	LNCaP	prostate:	n/a
25	chr8:117949839-117949889	AG10803	skin:	n/a
26	chr8:117949839-117949889	NT2-D1	testis:	n/a
27	chr8:117949839-117949889	HCPEpiC	choroid plexus:	n/a
28	chr8:117949839-117949889	HepG2	liver:	n/a
29	chr8:117949839-117949889	GM12892	blood:	n/a
30	chr8:117949839-117949889	NB4	blood:	n/a
31	chr8:117949839-117949889	ECC-1	luminal epithelium:	n/a
32	chr8:117949839-117949889	BE2_C	brain:	n/a
33	chr8:117949839-117949889	HEK293	kidney:	embryo
34	chr8:117949839-117949889	Hepatocyte	liver:	n/a
35	chr8:117949839-117949889	HCF	heart:	n/a
36	chr8:117949839-117949889	HRPEpiC	eye:	n/a
37	chr8:117949839-117949889	HEEpiC	esophagus:	n/a
38	chr8:117949839-117949889	A549	lung:	n/a
39	chr8:117949839-117949889	NH-A	brain:	n/a
40	chr8:117949839-117949889	AoSMC	blood vessel:	n/a
41	chr8:117949839-117949889	HNPCEpiC	eye:	n/a
42	chr8:117949839-117949889	HL-60	blood:	n/a
43	chr8:117949839-117949889	CMK	blood:	n/a
44	chr8:117949839-117949889	HRCEpiC	kidney:	n/a
45	chr8:117949839-117949889	T-47D	breast:	n/a
46	chr8:117949839-117949889	Caco-2	colon:	n/a
47	chr8:117949839-117949889	AG09319	gingival:	n/a
48	chr8:117949839-117949889	H1-hESC	embryonic stem cell:	embryo
49	chr8:117949839-117949889	ovcar-3	ovarian:	n/a
50	chr8:117949839-117949889	HCT-116	colon:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RAD21-1	chr8:117947899-117950697	NONHSAT128383

No data

Variant related genes	Relation type
AARD	TF binding region
AARD	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530386	chr8:117509968-118391406	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv831434	chr8:117784467-117977825	Flanking Active TSS Genic enhancers Weak transcription Enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv891409	chr8:117948986-117972064	Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:117948000-117950600	Weak transcription	NHEK	skin
2	chr8:117948400-117950000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr8:117949600-117950200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr8:117949600-117951000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
5	chr8:117949600-117951200	Active TSS	Colon Smooth Muscle	Colon
6	chr8:117949800-117950000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr8:117949800-117950000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
8	chr8:117949800-117950000	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr8:117949800-117950000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr8:117949800-117950000	Enhancers	Brain Cingulate Gyrus	brain
11	chr8:117949800-117950000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr8:117949800-117950000	Flanking Active TSS	HMEC	breast
13	chr8:117949800-117950200	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
14	chr8:117949800-117950200	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
15	chr8:117949800-117950200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
16	chr8:117949800-117950200	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
17	chr8:117949800-117950200	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
18	chr8:117949800-117950200	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
19	chr8:117949800-117950200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr8:117949800-117950600	Bivalent/Poised TSS	Fetal Lung	lung
21	chr8:117949800-117950800	Enhancers	Gastric	stomach
22	chr8:117949800-117951200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr8:117949800-117951200	Active TSS	Rectal Smooth Muscle	rectum
24	chr8:117949800-117951400	Active TSS	ES-I3 Cell Line	embryonic stem cell
25	chr8:117949800-117951400	Active TSS	H1 Cell Line	embryonic stem cell
26	chr8:117949800-117951400	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr8:117949800-117951400	Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links