Variant report

Variant	rs543824467
Chromosome Location	chr6:109542087-109542088
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:109537846..109539361-chr6:109541996..109544593,2	MCF-7	breast:
2	chr6:109541416..109543560-chr6:109616012..109618470,2	MCF-7	breast:
3	chr6:109541946..109544521-chr6:109546672..109551149,4	K562	blood:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527657	chr6:109533385-109579675	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	esv3413723	chr6:109541684-109544232	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:109517200-109544800	Weak transcription	Psoas Muscle	Psoas
2	chr6:109535200-109543000	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr6:109535200-109544000	Weak transcription	Aorta	Aorta
4	chr6:109535200-109545800	Weak transcription	Right Atrium	heart
5	chr6:109536000-109550800	Weak transcription	HSMMtube	muscle
6	chr6:109541600-109542400	Enhancers	Primary T cells from cord blood	blood
7	chr6:109541600-109542400	Enhancers	Stomach Mucosa	stomach
8	chr6:109541600-109543200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr6:109541600-109543400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr6:109541800-109542200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr6:109541800-109542200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
12	chr6:109541800-109542200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:109541800-109542400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:109541800-109542400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr6:109541800-109542400	Enhancers	Adipose Nuclei	Adipose
16	chr6:109541800-109542400	Enhancers	Fetal Kidney	kidney
17	chr6:109541800-109542400	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr6:109541800-109542600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr6:109542000-109542400	Enhancers	Primary T helper naive cells from peripheral blood	blood
20	chr6:109542000-109544000	Weak transcription	K562	blood
21	chr6:109542000-109545400	Weak transcription	Fetal Thymus	thymus

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