Variant report

Variant	rs543826502
Chromosome Location	chr6:165273513-165273514
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv605232	chr6:164994771-165401154	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv830862	chr6:165132822-165311086	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv11557	chr6:165269422-165273754	Enhancers Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv1846944	chr6:165271534-165276034	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:165273000-165273800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr6:165273200-165273800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:165273200-165273800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr6:165273400-165273800	Active TSS	Brain Angular Gyrus	brain
5	chr6:165273400-165273800	Active TSS	Brain Anterior Caudate	brain
6	chr6:165273400-165273800	Active TSS	Brain Hippocampus Middle	brain
7	chr6:165273400-165273800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr6:165273400-165273800	Active TSS	Brain Substantia Nigra	brain
9	chr6:165273400-165273800	Active TSS	Pancreatic Islets	Pancreatic Islet
10	chr6:165273400-165273800	Enhancers	Left Ventricle	heart
11	chr6:165273400-165274000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:165273400-165274200	Enhancers	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links