Variant report

Variant	rs543834665
Chromosome Location	chr15:57979144-57979145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57976708..57979222-chr15:57980893..57983839,2	K562	blood:
2	chr15:57978162..57980432-chr15:57997971..58000164,3	K562	blood:

Variant related genes	Relation type
ENSG00000255529	Chromatin interaction
ENSG00000137878	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	esv3405199	chr15:57979060-57982708	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv3325349	chr15:57979085-57981833	Weak transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57933400-57982600	Weak transcription	Esophagus	oesophagus
2	chr15:57959600-57982600	Weak transcription	Lung	lung
3	chr15:57960800-57985000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:57968200-57983600	Weak transcription	Gastric	stomach
5	chr15:57973000-57984600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:57975600-57982600	Weak transcription	Right Atrium	heart
7	chr15:57975600-57986600	Weak transcription	Rectal Smooth Muscle	rectum
8	chr15:57975800-57986400	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:57976800-57979200	Enhancers	Aorta	Aorta
10	chr15:57977200-57979200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:57977200-57982600	Weak transcription	Adipose Nuclei	Adipose
12	chr15:57977200-57984800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr15:57977400-57982600	Weak transcription	Pancreas	Pancrea
14	chr15:57978000-57979200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr15:57978000-57979200	Enhancers	Muscle Satellite Cultured Cells	--
16	chr15:57978000-57979200	Enhancers	Fetal Intestine Small	intestine
17	chr15:57978200-57983600	Weak transcription	Spleen	Spleen
18	chr15:57978400-57982400	Weak transcription	Left Ventricle	heart
19	chr15:57978400-57983800	Weak transcription	Fetal Kidney	kidney
20	chr15:57978400-57984600	Weak transcription	Fetal Stomach	stomach
21	chr15:57978400-57985000	Weak transcription	Fetal Intestine Large	intestine
22	chr15:57978800-57982200	Weak transcription	Fetal Heart	heart
23	chr15:57978800-57982400	Weak transcription	Right Ventricle	heart
24	chr15:57978800-57984400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr15:57979000-57979200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr15:57979000-57979200	Enhancers	Ovary	ovary

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