Variant report

Variant	rs543865556
Chromosome Location	chr4:99063884-99063885
allele	-/AT
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99062262..99068404-chr4:99178848..99183768,9	MCF-7	breast:

Variant related genes	Relation type
ENSG00000138698	Chromatin interaction
ENSG00000214559	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879643	chr4:98317295-99065480	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1002098	chr4:98501337-99086320	Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv537193	chr4:98501337-99086320	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv529623	chr4:98501338-99460166	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Genic enhancers Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
5	nsv879648	chr4:98547717-99104879	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1000011	chr4:98562308-99101692	Active TSS Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1000956	chr4:98732458-99178588	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
8	nsv528390	chr4:98873667-99065480	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv1001570	chr4:98976239-99239838	Weak transcription Enhancers Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
10	nsv879650	chr4:99057457-99172232	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv998270	chr4:99063275-99120404	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99063400-99064800	Active TSS	iPS-20b Cell Line	embryonic stem cell
2	chr4:99063400-99065200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr4:99063400-99065600	Active TSS	Rectal Mucosa Donor 29	rectum
4	chr4:99063600-99064000	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
5	chr4:99063600-99064000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr4:99063600-99064000	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr4:99063600-99064000	Enhancers	Primary B cells from peripheral blood	blood
8	chr4:99063600-99064000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
9	chr4:99063600-99064000	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:99063600-99064000	Enhancers	Primary T killer memory cells from peripheral blood	blood
11	chr4:99063600-99064000	Flanking Active TSS	NHEK	skin
12	chr4:99063600-99064200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr4:99063600-99064200	Flanking Active TSS	Liver	Liver
14	chr4:99063600-99064800	Active TSS	GM12878-XiMat	blood
15	chr4:99063600-99064800	Active TSS	HMEC	breast
16	chr4:99063600-99065200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
17	chr4:99063600-99065200	Active TSS	HUES48 Cell Line	embryonic stem cell
18	chr4:99063600-99065200	Active TSS	HUES64 Cell Line	embryonic stem cell
19	chr4:99063600-99065200	Active TSS	Brain Germinal Matrix	brain
20	chr4:99063800-99064000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
21	chr4:99063800-99064000	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr4:99063800-99064000	Enhancers	Primary T cells fromperipheralblood	blood
23	chr4:99063800-99064000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr4:99063800-99064000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
25	chr4:99063800-99064000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr4:99063800-99064000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr4:99063800-99064000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr4:99063800-99064000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr4:99063800-99064000	Enhancers	Cortex derived primary cultured neurospheres	brain
30	chr4:99063800-99064000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr4:99063800-99064000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr4:99063800-99064000	Flanking Active TSS	Fetal Intestine Small	intestine
33	chr4:99063800-99064000	Enhancers	Fetal Muscle Leg	muscle
34	chr4:99063800-99064000	Enhancers	Placenta	Placenta
35	chr4:99063800-99064000	Enhancers	Skeletal Muscle Male	skeletal muscle
36	chr4:99063800-99064200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr4:99063800-99064200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr4:99063800-99064200	Flanking Active TSS	Primary T cells from cord blood	blood
39	chr4:99063800-99064200	Flanking Active TSS	Primary hematopoietic stem cells	blood
40	chr4:99063800-99064200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
41	chr4:99063800-99064200	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
42	chr4:99063800-99064200	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
43	chr4:99063800-99064200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
44	chr4:99063800-99064200	Flanking Active TSS	Adipose Nuclei	Adipose
45	chr4:99063800-99064200	Flanking Active TSS	Brain Angular Gyrus	brain
46	chr4:99063800-99064200	Flanking Active TSS	Brain Anterior Caudate	brain
47	chr4:99063800-99064200	Flanking Active TSS	Brain Cingulate Gyrus	brain
48	chr4:99063800-99064200	Flanking Active TSS	Colon Smooth Muscle	Colon
49	chr4:99063800-99064200	Flanking Active TSS	Duodenum Mucosa	Duodenum
50	chr4:99063800-99064200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland

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