Variant report

Variant	rs543900742
Chromosome Location	chr9:95783743-95783744
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:95782411..95784335-chr9:95855706..95857608,2	K562	blood:
2	chr9:95782537..95784143-chr9:95785904..95788136,2	K562	blood:
3	chr9:95768818..95771189-chr9:95783701..95785412,2	MCF-7	breast:
4	chr9:95780776..95784501-chr9:95797559..95801380,3	MCF-7	breast:
5	chr9:95781868..95785677-chr9:95818293..95823029,4	MCF-7	breast:
6	chr9:95775081..95777481-chr9:95781149..95784106,3	MCF-7	breast:
7	chr9:95781146..95783755-chr9:95792336..95795083,2	K562	blood:
8	chr9:95764926..95767414-chr9:95782606..95784200,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000127084	Chromatin interaction
ENSG00000157303	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv1054767	chr9:95738134-95875977	Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Enhancers Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1035230	chr9:95770249-95934982	Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv893575	chr9:95781040-95854013	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv521136	chr9:95782667-95798871	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95761600-95785800	Strong transcription	Primary neutrophils fromperipheralblood	blood
2	chr9:95761600-95785800	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr9:95762000-95786400	Strong transcription	Primary monocytes fromperipheralblood	blood
4	chr9:95762600-95790200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr9:95763600-95787200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr9:95763800-95789400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr9:95766400-95785600	Strong transcription	Primary B cells from peripheral blood	blood
8	chr9:95766600-95790400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr9:95766600-95790800	Weak transcription	Right Ventricle	heart
10	chr9:95766600-95791000	Weak transcription	Colonic Mucosa	Colon
11	chr9:95766600-95791000	Weak transcription	Rectal Smooth Muscle	rectum
12	chr9:95766600-95794000	Weak transcription	Brain Hippocampus Middle	brain
13	chr9:95766800-95786400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr9:95767000-95787200	Strong transcription	Fetal Thymus	thymus
15	chr9:95770200-95793600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr9:95773400-95786600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr9:95774200-95783800	Weak transcription	Fetal Brain Male	brain
18	chr9:95774800-95788400	Strong transcription	Thymus	Thymus
19	chr9:95775000-95786600	Strong transcription	Primary B cells from cord blood	blood
20	chr9:95776600-95799200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr9:95776600-95799400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr9:95778000-95786600	Strong transcription	Spleen	Spleen
23	chr9:95778600-95786400	Weak transcription	Gastric	stomach
24	chr9:95779600-95785800	Strong transcription	Fetal Intestine Large	intestine
25	chr9:95779600-95786600	Strong transcription	Dnd41	blood
26	chr9:95779600-95788800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
27	chr9:95779600-95798400	Strong transcription	Brain Germinal Matrix	brain
28	chr9:95780800-95787800	Strong transcription	Primary hematopoietic stem cells	blood
29	chr9:95781000-95786400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr9:95781000-95786600	Weak transcription	Stomach Smooth Muscle	stomach
31	chr9:95781200-95789400	Genic enhancers	Primary T helper cells PMA-I stimulated	--
32	chr9:95781400-95784000	Genic enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr9:95781600-95784200	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr9:95781600-95785000	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
35	chr9:95781600-95785600	Strong transcription	GM12878-XiMat	blood
36	chr9:95781600-95785800	Strong transcription	Duodenum Mucosa	Duodenum
37	chr9:95781600-95787200	Strong transcription	Fetal Intestine Small	intestine
38	chr9:95781600-95788800	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr9:95781800-95784000	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr9:95781800-95786000	Strong transcription	Pancreas	Pancrea
41	chr9:95781800-95786600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
42	chr9:95781800-95789200	Strong transcription	Lung	lung
43	chr9:95781800-95789600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
44	chr9:95781800-95790400	Genic enhancers	Primary T cells fromperipheralblood	blood
45	chr9:95782000-95789600	Genic enhancers	Primary T cells from cord blood	blood
46	chr9:95782200-95790000	Genic enhancers	Primary T killer naive cells fromperipheralblood	blood
47	chr9:95782400-95784200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr9:95782600-95783800	Genic enhancers	Fetal Muscle Trunk	muscle
49	chr9:95783000-95784200	Strong transcription	Sigmoid Colon	Sigmoid Colon
50	chr9:95783000-95793800	Weak transcription	Liver	Liver

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