Variant report

Variant	rs543901731
Chromosome Location	chr20:23015756-23015757
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv912816	chr20:22757960-23062927	Flanking Active TSS Bivalent/Poised TSS Enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv524981	chr20:23011468-23021597	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3400736	chr20:23014752-23018200	Bivalent Enhancer Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr20:23001000-23015800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr20:23013200-23016200	Weak transcription	Lung	lung
3	chr20:23013200-23017400	Enhancers	Fetal Heart	heart
4	chr20:23014000-23015800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr20:23014600-23016200	Weak transcription	Dnd41	blood
6	chr20:23015200-23015800	Weak transcription	Spleen	Spleen
7	chr20:23015400-23015800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
8	chr20:23015400-23016000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr20:23015400-23016200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
10	chr20:23015400-23016600	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
11	chr20:23015600-23015800	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr20:23015600-23015800	Flanking Bivalent TSS/Enh	Brain Germinal Matrix	brain
13	chr20:23015600-23016000	Enhancers	Primary hematopoietic stem cells	blood
14	chr20:23015600-23016000	Bivalent/Poised TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr20:23015600-23016000	Active TSS	Right Ventricle	heart
16	chr20:23015600-23016400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr20:23015600-23016400	Bivalent/Poised TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr20:23015600-23016400	Bivalent Enhancer	Fetal Brain Male	brain
19	chr20:23015600-23016600	Bivalent Enhancer	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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