Variant report

Variant	rs543912566
Chromosome Location	chr2:85886731-85886732
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:2)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr2:85856113..85858844-chr2:85885190..85887112,2	MCF-7	breast:
2	chr2:85880829..85882437-chr2:85885388..85887097,2	K562	blood:
3	chr2:85886384..85888298-chr2:85898868..85900454,2	MCF-7	breast:
4	chr2:85883102..85885218-chr2:85885321..85888097,2	K562	blood:

(count:2 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C2orf68-2	chr2:85886447-85886849	NONHSAT072034
2	lnc-C2orf68-2	chr2:85886447-85886805	NONHSAT072035

No data

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv874459	chr2:85828014-85939207	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv874460	chr2:85828014-85941074	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv874461	chr2:85853653-85939207	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv874462	chr2:85853653-85941074	Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
5	nsv874463	chr2:85853653-85946708	Strong transcription Bivalent Enhancer Enhancers Weak transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv874464	chr2:85886175-85898898	Enhancers Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:109 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:85846000-85887000	Strong transcription	Liver	Liver
2	chr2:85846000-85887400	Strong transcription	Fetal Intestine Small	intestine
3	chr2:85846200-85889400	Strong transcription	Thymus	Thymus
4	chr2:85862000-85887200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr2:85876400-85888800	Weak transcription	Fetal Heart	heart
6	chr2:85876400-85888800	Weak transcription	Right Atrium	heart
7	chr2:85876600-85895400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr2:85877000-85889000	Weak transcription	Stomach Mucosa	stomach
9	chr2:85877000-85890000	Weak transcription	Ovary	ovary
10	chr2:85877200-85888600	Weak transcription	Aorta	Aorta
11	chr2:85877200-85893200	Weak transcription	Brain Substantia Nigra	brain
12	chr2:85877800-85890200	Weak transcription	Small Intestine	intestine
13	chr2:85878200-85888800	Weak transcription	Brain Anterior Caudate	brain
14	chr2:85878800-85891400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr2:85879400-85888000	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr2:85879400-85889200	Weak transcription	Colonic Mucosa	Colon
17	chr2:85879400-85890200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr2:85879400-85890200	Weak transcription	Placenta Amnion	Placenta Amnion
19	chr2:85879600-85887000	Weak transcription	Colon Smooth Muscle	Colon
20	chr2:85879600-85889800	Weak transcription	Fetal Intestine Large	intestine
21	chr2:85879600-85894000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr2:85879600-85896000	Weak transcription	GM12878-XiMat	blood
23	chr2:85879800-85888600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr2:85880000-85888000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr2:85880200-85887800	Weak transcription	HUVEC	blood vessel
26	chr2:85880200-85888800	Weak transcription	Brain Hippocampus Middle	brain
27	chr2:85880400-85891800	Weak transcription	HepG2	liver
28	chr2:85880600-85888800	Weak transcription	Left Ventricle	heart
29	chr2:85880600-85889400	Weak transcription	Pancreas	Pancrea
30	chr2:85880600-85889600	Weak transcription	Brain Germinal Matrix	brain
31	chr2:85880600-85890200	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr2:85880600-85890200	Weak transcription	Rectal Smooth Muscle	rectum
33	chr2:85880800-85889800	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr2:85880800-85890200	Weak transcription	K562	blood
35	chr2:85881400-85889200	Weak transcription	Rectal Mucosa Donor 31	rectum
36	chr2:85881400-85891000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr2:85881600-85888200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr2:85881600-85888800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
39	chr2:85881600-85890200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
40	chr2:85881800-85887200	Strong transcription	Primary monocytes fromperipheralblood	blood
41	chr2:85881800-85895800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr2:85882400-85887000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr2:85882400-85887200	Strong transcription	Primary T cells from cord blood	blood
44	chr2:85882400-85887200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
45	chr2:85882400-85890400	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr2:85882600-85887000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr2:85882800-85887400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr2:85883000-85887000	Strong transcription	Fetal Brain Female	brain
49	chr2:85883000-85887000	Strong transcription	Fetal Muscle Trunk	muscle
50	chr2:85883000-85887200	Strong transcription	Fetal Thymus	thymus

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