Variant report

Variant	rs543963413
Chromosome Location	chr15:59713528-59713529
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
2	nsv934082	chr15:59608605-59733211	Flanking Active TSS Enhancers Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases
3	nsv904275	chr15:59648633-59726610	Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	n/a
4	nsv904276	chr15:59648633-59743010	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	n/a
5	nsv904278	chr15:59705005-59784648	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
6	nsv976940	chr15:59712165-59721638	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	n/a
7	esv2481152	chr15:59712179-59713784	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59711200-59713600	Enhancers	Primary B cells from cord blood	blood
2	chr15:59711600-59713600	Enhancers	Primary B cells from peripheral blood	blood
3	chr15:59712000-59713600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:59712200-59713800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr15:59713200-59713600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
6	chr15:59713200-59713600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
7	chr15:59713200-59713800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr15:59713400-59713600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr15:59713400-59713600	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
10	chr15:59713400-59713600	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
11	chr15:59713400-59713600	Flanking Bivalent TSS/Enh	iPS-15b Cell Line	embryonic stem cell
12	chr15:59713400-59713600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
13	chr15:59713400-59713600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
14	chr15:59713400-59713600	Bivalent Enhancer	Primary T cells from cord blood	blood
15	chr15:59713400-59713600	Bivalent Enhancer	Left Ventricle	heart
16	chr15:59713400-59713800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr15:59713400-59713800	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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