Variant report

Variant	rs544009960
Chromosome Location	chr15:72573153-72573154
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72572263..72574208-chr15:72582105..72583633,2	K562	blood:
2	chr15:72564271..72566801-chr15:72572069..72573786,2	K562	blood:

Variant related genes	Relation type
ENSG00000137817	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431395	chr15:72266174-72701777	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
2	nsv530817	chr15:72350885-72773374	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	173 gene(s)	inside rSNPs	diseases
3	esv3430860	chr15:72373723-72849907	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	172 gene(s)	inside rSNPs	diseases
4	nsv1601	chr15:72549885-72585176	Flanking Active TSS Weak transcription Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
5	esv3494908	chr15:72570698-72576646	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
6	esv3494909	chr15:72571098-72576596	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
7	esv3494906	chr15:72571458-72576046	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	esv16227	chr15:72571691-72575838	Weak transcription Enhancers Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
9	esv3494901	chr15:72571693-72575683	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
10	esv3494902	chr15:72571729-72575642	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
11	esv3311832	chr15:72571740-72575685	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
12	esv3494903	chr15:72571778-72575661	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
13	esv3311831	chr15:72571790-72575658	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
14	esv3494905	chr15:72571809-72575621	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
15	esv3494904	chr15:72571919-72575591	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
16	esv3311833	chr15:72571928-72575582	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
17	esv3494910	chr15:72571928-72575582	Weak transcription Enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
18	nsv569946	chr15:72572642-72575509	Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72566000-72573600	Weak transcription	Brain Anterior Caudate	brain
2	chr15:72566000-72573600	Weak transcription	Brain Substantia Nigra	brain
3	chr15:72566000-72575800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr15:72566000-72576400	Weak transcription	Colon Smooth Muscle	Colon
5	chr15:72566000-72577800	Weak transcription	Fetal Intestine Small	intestine
6	chr15:72566000-72582400	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:72566000-72611400	Weak transcription	Right Ventricle	heart
8	chr15:72566200-72573600	Weak transcription	Brain Hippocampus Middle	brain
9	chr15:72566200-72577000	Weak transcription	Ovary	ovary
10	chr15:72566200-72577600	Weak transcription	Brain Angular Gyrus	brain
11	chr15:72566200-72578400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr15:72566200-72579200	Weak transcription	Primary T cells from cord blood	blood
13	chr15:72566400-72573600	Weak transcription	K562	blood
14	chr15:72567000-72611800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr15:72567800-72581400	Weak transcription	Fetal Muscle Leg	muscle
16	chr15:72569000-72576800	Weak transcription	HSMMtube	muscle
17	chr15:72569200-72574000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr15:72571200-72573600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr15:72572200-72573600	Weak transcription	Brain Cingulate Gyrus	brain
20	chr15:72572400-72573800	Enhancers	Adipose Nuclei	Adipose
21	chr15:72572600-72573800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr15:72572800-72573200	Enhancers	Fetal Intestine Large	intestine
23	chr15:72572800-72573800	Enhancers	Liver	Liver
24	chr15:72572800-72574200	Enhancers	HepG2	liver
25	chr15:72573000-72573200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
26	chr15:72573000-72582600	Weak transcription	Placenta	Placenta

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