Variant report

Variant	rs544027479
Chromosome Location	chr13:85219943-85219944
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900691	chr13:85206473-85294881	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1851778	chr13:85206473-85299207	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900692	chr13:85218788-85294881	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85218600-85220400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr13:85218600-85222400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr13:85218800-85220000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr13:85218800-85220200	Enhancers	Aorta	Aorta
5	chr13:85218800-85220400	Enhancers	Primary hematopoietic stem cells short term culture	blood
6	chr13:85218800-85220400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr13:85218800-85220400	Enhancers	HSMM	muscle
8	chr13:85218800-85220600	Enhancers	Osteobl	bone
9	chr13:85219000-85220400	Enhancers	Primary hematopoietic stem cells	blood
10	chr13:85219200-85220000	Enhancers	Muscle Satellite Cultured Cells	--
11	chr13:85219200-85225200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr13:85219400-85220000	Enhancers	NHEK	skin
13	chr13:85219400-85220200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr13:85219400-85220600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr13:85219600-85220000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr13:85219600-85220000	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr13:85219600-85220000	Enhancers	Stomach Smooth Muscle	stomach
18	chr13:85219600-85220200	Enhancers	NH-A	brain
19	chr13:85219800-85220000	Enhancers	Left Ventricle	heart
20	chr13:85219800-85220400	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr13:85219800-85227600	Weak transcription	Right Ventricle	heart
22	chr13:85219800-85229800	Weak transcription	H9 Cell Line	embryonic stem cell

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