Variant report

Variant	rs544183898
Chromosome Location	chr13:39926534-39926535
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1036674	chr13:39841482-40008117	Bivalent Enhancer Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3351259	chr13:39926252-39928150	Enhancers Weak transcription Genic enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:39916200-39928000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr13:39916800-39928000	Weak transcription	NHDF-Ad	bronchial
3	chr13:39918200-39928000	Weak transcription	Esophagus	oesophagus
4	chr13:39924000-39926600	Weak transcription	Lung	lung
5	chr13:39924000-39928000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr13:39925000-39928000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr13:39925000-39928000	Weak transcription	Osteobl	bone
8	chr13:39925200-39926800	Enhancers	Fetal Heart	heart
9	chr13:39925200-39928000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr13:39925200-39928600	Weak transcription	Fetal Lung	lung
11	chr13:39925200-39936800	Weak transcription	Brain Cingulate Gyrus	brain
12	chr13:39925200-39938600	Weak transcription	Aorta	Aorta
13	chr13:39925400-39928000	Weak transcription	Adipose Nuclei	Adipose
14	chr13:39925400-39928000	Weak transcription	Right Ventricle	heart
15	chr13:39925400-39929200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr13:39925600-39928800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr13:39926200-39926600	Enhancers	Fetal Muscle Leg	muscle
18	chr13:39926200-39926800	Enhancers	Left Ventricle	heart
19	chr13:39926200-39926800	Enhancers	Right Atrium	heart
20	chr13:39926400-39926600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr13:39926400-39926600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:39926400-39929800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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