Variant report

Variant	rs544235557
Chromosome Location	chr10:94660428-94660429
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:94657045..94660020-chr10:94660295..94662029,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041805	chr10:94624759-94699623	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv895898	chr10:94628274-94810665	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv1039122	chr10:94636267-94693706	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1039261	chr10:94659515-94706633	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
5	esv1847300	chr10:94660133-94670849	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv515937	chr10:94660133-94725508	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
7	nsv518124	chr10:94660133-94778283	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
8	nsv522103	chr10:94660133-94810665	ZNF genes & repeats Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:94647800-94661400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr10:94650800-94661200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr10:94652400-94661200	Weak transcription	Primary T cells fromperipheralblood	blood
4	chr10:94652400-94672600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr10:94652400-94674200	Weak transcription	Psoas Muscle	Psoas
6	chr10:94652400-94681000	Weak transcription	Fetal Stomach	stomach
7	chr10:94652400-94717400	Weak transcription	Esophagus	oesophagus
8	chr10:94652600-94663800	Weak transcription	Liver	Liver
9	chr10:94652600-94664000	Weak transcription	Small Intestine	intestine
10	chr10:94652600-94667000	Weak transcription	Pancreas	Pancrea
11	chr10:94652600-94669600	Weak transcription	Left Ventricle	heart
12	chr10:94652600-94680000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr10:94652600-94680000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr10:94652600-94680200	Weak transcription	Brain Anterior Caudate	brain
15	chr10:94652600-94688800	Weak transcription	Placenta	Placenta
16	chr10:94652600-94712400	Weak transcription	Brain Angular Gyrus	brain
17	chr10:94652600-94718000	Weak transcription	Ovary	ovary
18	chr10:94652600-94742400	Weak transcription	HSMMtube	muscle
19	chr10:94652800-94666800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr10:94652800-94671200	Weak transcription	Fetal Heart	heart
21	chr10:94652800-94706600	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr10:94653000-94669800	Weak transcription	Hela-S3	cervix
23	chr10:94653200-94662200	Weak transcription	HepG2	liver
24	chr10:94653200-94725200	Weak transcription	Fetal Lung	lung
25	chr10:94653400-94730200	Weak transcription	Fetal Brain Male	brain
26	chr10:94654000-94662200	Strong transcription	HUVEC	blood vessel
27	chr10:94654400-94660600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
28	chr10:94654600-94680200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
29	chr10:94654600-94714600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr10:94655000-94660800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr10:94655000-94673200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr10:94655000-94680200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr10:94655200-94661400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr10:94655200-94667000	Weak transcription	Fetal Intestine Large	intestine
35	chr10:94655200-94680200	Weak transcription	Cortex derived primary cultured neurospheres	brain
36	chr10:94655200-94689200	Weak transcription	Brain Germinal Matrix	brain
37	chr10:94655400-94672800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
38	chr10:94655600-94661400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr10:94655600-94667800	Weak transcription	Fetal Intestine Small	intestine
40	chr10:94655600-94688800	Weak transcription	Fetal Thymus	thymus
41	chr10:94656400-94680600	Weak transcription	Fetal Kidney	kidney
42	chr10:94656800-94674000	Strong transcription	Monocytes-CD14+_RO01746	blood
43	chr10:94657200-94661000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
44	chr10:94657200-94680200	Weak transcription	Adipose Nuclei	Adipose
45	chr10:94657400-94661200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
46	chr10:94657400-94673800	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr10:94657800-94660800	Weak transcription	Primary T helper cells fromperipheralblood	blood
48	chr10:94657800-94667000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr10:94657800-94669600	Weak transcription	K562	blood
50	chr10:94657800-94674200	Weak transcription	Skeletal Muscle Female	skeletal muscle

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