Variant report

Variant	rs544266338
Chromosome Location	chr17:59801123-59801124
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:58)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:58 , 50 per page) page: 1 2

No.	Distal block	Cell Line	Cell type
1	chr17:59800372..59801306-chr17:59822185..59823197,8	MCF-7	breast:
2	chr17:59800317..59801231-chr17:59822185..59823019,3	MCF-7	breast:
3	chr17:59800856..59804163-chr17:59876065..59879949,4	MCF-7	breast:
4	chr17:59800343..59801227-chr17:59843602..59844157,2	MCF-7	breast:
5	chr17:59800321..59801296-chr20:47480983..47481908,3	MCF-7	breast:
6	chr17:59489613..59491206-chr17:59800419..59803266,2	MCF-7	breast:
7	chr17:59433806..59434541-chr17:59800526..59801334,3	MCF-7	breast:
8	chr17:59800383..59801192-chr17:59835796..59836499,3	MCF-7	breast:
9	chr17:59800397..59801337-chr17:59877348..59878274,6	MCF-7	breast:
10	chr17:59800371..59801238-chr17:59939273..59939890,4	MCF-7	breast:
11	chr17:59800386..59801228-chr20:49343586..49344517,7	MCF-7	breast:
12	chr17:59476372..59477451-chr17:59800613..59801275,3	MCF-7	breast:
13	chr17:59800309..59801230-chr20:52739857..52740788,6	MCF-7	breast:
14	chr17:57084964..57085505-chr17:59800528..59801279,2	MCF-7	breast:
15	chr17:59800570..59801187-chr20:46704731..46705306,2	MCF-7	breast:
16	chr17:56716811..56717664-chr17:59800437..59801199,3	MCF-7	breast:
17	chr17:59800558..59801192-chr17:59809224..59809872,3	MCF-7	breast:
18	chr17:59800860..59802711-chr9:132596454..132599120,2	MCF-7	breast:
19	chr17:59800404..59801266-chr20:52765423..52766339,4	MCF-7	breast:
20	chr17:59800429..59801155-chr20:55837801..55838690,3	MCF-7	breast:
21	chr17:59800328..59801140-chr17:59939377..59940266,3	MCF-7	breast:
22	chr17:59488237..59489792-chr17:59800592..59802386,2	MCF-7	breast:
23	chr17:56716763..56717369-chr17:59800406..59801321,3	MCF-7	breast:
24	chr17:59782329..59785293-chr17:59799668..59801458,2	MCF-7	breast:
25	chr17:59800396..59801468-chr17:59877458..59878364,3	MCF-7	breast:
26	chr17:59800566..59802805-chr3:64485912..64488296,2	MCF-7	breast:
27	chr17:59800312..59801233-chr20:49343624..49344846,7	MCF-7	breast:
28	chr17:59476542..59477343-chr17:59800457..59801257,2	MCF-7	breast:
29	chr17:59800395..59801174-chr17:59877584..59878511,3	MCF-7	breast:
30	chr17:59800373..59801238-chr17:59939362..59940177,3	MCF-7	breast:
31	chr17:59800450..59801131-chr3:61793183..61793716,2	MCF-7	breast:
32	chr17:59799068..59802812-chr17:59939029..59942892,4	MCF-7	breast:
33	chr17:59800313..59801296-chr20:47480983..47481948,4	MCF-7	breast:
34	chr17:59799043..59801917-chr17:59870010..59871675,2	MCF-7	breast:
35	chr17:59800131..59801317-chr20:52765395..52766291,6	MCF-7	breast:
36	chr17:59800446..59802720-chr17:59893670..59895500,2	MCF-7	breast:
37	chr17:56716777..56717664-chr17:59800437..59801248,5	MCF-7	breast:
38	chr17:59800256..59801266-chr20:52765423..52766339,6	MCF-7	breast:
39	chr17:59801109..59803625-chr8:101320526..101322625,2	MCF-7	breast:
40	chr17:59756079..59756760-chr17:59800573..59801322,2	MCF-7	breast:
41	chr17:59800443..59801206-chr20:47480948..47481946,3	MCF-7	breast:
42	chr17:59800387..59801536-chr17:59877330..59878344,11	MCF-7	breast:
43	chr12:26254023..26254763-chr17:59800543..59801129,2	MCF-7	breast:
44	chr17:59800559..59801246-chr20:52743568..52744306,2	MCF-7	breast:
45	chr17:59800382..59801278-chr20:55837914..55838754,4	MCF-7	breast:
46	chr17:57925013..57927628-chr17:59800344..59802018,3	MCF-7	breast:
47	chr17:59800380..59801231-chr20:52811726..52812508,4	MCF-7	breast:
48	chr17:59799787..59802608-chr17:59908200..59910482,3	MCF-7	breast:
49	chr17:59799963..59801580-chr20:49286835..49288834,2	MCF-7	breast:
50	chr1:116616355..116617088-chr17:59800647..59801314,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000136492	Chromatin interaction
ENSG00000136878	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000136819	Chromatin interaction
ENSG00000187013	Chromatin interaction
ENSG00000034677	Chromatin interaction
ENSG00000121068	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59766000-59819000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr17:59778200-59805800	Weak transcription	Thymus	Thymus
3	chr17:59781600-59835400	Weak transcription	Hela-S3	cervix
4	chr17:59784400-59815200	Weak transcription	HMEC	breast
5	chr17:59786600-59815400	Weak transcription	Fetal Thymus	thymus
6	chr17:59792000-59815200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr17:59793200-59803400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr17:59793200-59819400	Weak transcription	NH-A	brain
9	chr17:59793600-59821200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr17:59794200-59815200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr17:59794200-59819600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr17:59794400-59815200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:59794400-59816200	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr17:59794400-59848200	Weak transcription	HUVEC	blood vessel
15	chr17:59794600-59807200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr17:59794800-59806000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr17:59794800-59815200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr17:59796200-59805600	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr17:59796200-59805800	Weak transcription	A549	lung
20	chr17:59796200-59814400	Weak transcription	Primary hematopoietic stem cells	blood
21	chr17:59797400-59817600	Weak transcription	Cortex derived primary cultured neurospheres	brain
22	chr17:59797600-59813000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr17:59798200-59803400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr17:59798400-59803400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
25	chr17:59798400-59815000	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr17:59798800-59816400	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr17:59800800-59803000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr17:59800800-59814400	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr17:59801000-59803000	Weak transcription	Dnd41	blood
30	chr17:59801000-59815400	Weak transcription	HepG2	liver

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