Variant report

Variant	rs544322296
Chromosome Location	chr4:99461778-99461779
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:99460334..99463092-chr4:99464059..99466192,2	MCF-7	breast:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754250	chr4:99094922-99527122	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv1004181	chr4:99208152-99529576	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	esv2760882	chr4:99460485-99521345	Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:99445200-99461800	Weak transcription	HMEC	breast
2	chr4:99445400-99465400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr4:99446000-99467400	Weak transcription	Fetal Stomach	stomach
4	chr4:99449400-99464200	Weak transcription	Fetal Brain Female	brain
5	chr4:99449800-99467400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr4:99450200-99467400	Weak transcription	Osteobl	bone
7	chr4:99450400-99461800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr4:99450400-99465200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:99450800-99468000	Weak transcription	HSMM	muscle
10	chr4:99458200-99465400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr4:99458800-99464400	Enhancers	Ovary	ovary
12	chr4:99459000-99468000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr4:99459200-99462000	Weak transcription	Fetal Intestine Small	intestine
14	chr4:99459200-99465000	Weak transcription	Fetal Brain Male	brain
15	chr4:99459200-99468000	Weak transcription	Esophagus	oesophagus
16	chr4:99459200-99479600	Weak transcription	Spleen	Spleen
17	chr4:99459400-99461800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr4:99459600-99465000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr4:99459600-99465400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr4:99459600-99465400	Weak transcription	Brain Cingulate Gyrus	brain
21	chr4:99459600-99466000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr4:99459600-99467800	Weak transcription	NHLF	lung
23	chr4:99459800-99461800	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:99459800-99462000	Weak transcription	Brain Angular Gyrus	brain
25	chr4:99459800-99465400	Weak transcription	Brain Anterior Caudate	brain
26	chr4:99460200-99463400	Weak transcription	Fetal Heart	heart
27	chr4:99460600-99463400	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr4:99461000-99467400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr4:99461200-99464200	Enhancers	NHEK	skin
30	chr4:99461200-99465400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr4:99461600-99462600	Enhancers	Brain Substantia Nigra	brain
32	chr4:99461600-99464000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links