Variant report

Variant	rs544351298
Chromosome Location	chr13:98008735-98008736
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TBL1XR1	chr13:98008700-98008822	K562	blood:	n/a	n/a
2	POLR2A	chr13:97998178-98014027	K562	blood:	n/a	n/a
3	POLR2A	chr13:98008727-98009137	HepG2	liver:	n/a	n/a

Variant related genes	Relation type
MBNL2	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832694	chr13:97930561-98137882	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1038798	chr13:98008467-98068130	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:97982000-98009000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr13:97982600-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr13:97991600-98020800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr13:97992800-98020800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr13:97994200-98016200	Weak transcription	NHDF-Ad	bronchial
6	chr13:97995200-98011000	Strong transcription	Placenta	Placenta
7	chr13:97995400-98050200	Weak transcription	Small Intestine	intestine
8	chr13:97996200-98019400	Weak transcription	GM12878-XiMat	blood
9	chr13:97997400-98011600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr13:97997400-98019000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:97998400-98015800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr13:97999600-98019200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr13:98000000-98009600	Weak transcription	Gastric	stomach
14	chr13:98000200-98008800	Weak transcription	Right Ventricle	heart
15	chr13:98002200-98009600	Weak transcription	Esophagus	oesophagus
16	chr13:98002400-98009000	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr13:98002400-98027200	Weak transcription	Lung	lung
18	chr13:98002400-98039600	Weak transcription	Spleen	Spleen
19	chr13:98002600-98013600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr13:98002600-98021600	Weak transcription	Colonic Mucosa	Colon
21	chr13:98002800-98009800	Weak transcription	Fetal Thymus	thymus
22	chr13:98003200-98021200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
23	chr13:98003600-98009800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr13:98003800-98009600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr13:98003800-98009800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
26	chr13:98003800-98011600	Weak transcription	Brain Germinal Matrix	brain
27	chr13:98003800-98011600	Weak transcription	Colon Smooth Muscle	Colon
28	chr13:98003800-98012800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr13:98003800-98013000	Weak transcription	Stomach Smooth Muscle	stomach
30	chr13:98003800-98018000	Weak transcription	Fetal Brain Male	brain
31	chr13:98003800-98019000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr13:98004000-98009000	Weak transcription	A549	lung
33	chr13:98004000-98009400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr13:98004000-98009600	Weak transcription	Pancreas	Pancrea
35	chr13:98004000-98013000	Weak transcription	Ovary	ovary
36	chr13:98004000-98013200	Weak transcription	Fetal Kidney	kidney
37	chr13:98004000-98018600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr13:98004000-98019200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
39	chr13:98004000-98021000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr13:98004200-98008800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr13:98004200-98009400	Weak transcription	Aorta	Aorta
42	chr13:98004200-98009600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr13:98004200-98010200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
44	chr13:98004200-98012800	Weak transcription	Fetal Stomach	stomach
45	chr13:98004200-98014200	Weak transcription	Fetal Intestine Small	intestine
46	chr13:98004400-98011000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr13:98004400-98011600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr13:98004400-98019400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
49	chr13:98005400-98012800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr13:98005400-98021600	Weak transcription	Thymus	Thymus

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